Variant report

Variant	rs13071550
Chromosome Location	chr3:134517466-134517467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11921721	0.83[EUR][1000 genomes]
rs35910633	0.85[EUR][1000 genomes]
rs6805457	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134515800-134518400	Weak transcription	Aorta	Aorta
2	chr3:134515800-134523600	Weak transcription	Pancreas	Pancrea
3	chr3:134516000-134517600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr3:134516000-134518000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:134516400-134517600	Active TSS	GM12878-XiMat	blood
6	chr3:134516400-134518600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr3:134516400-134519400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr3:134516600-134517600	Weak transcription	Psoas Muscle	Psoas
9	chr3:134516600-134518000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:134516800-134517600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr3:134516800-134517800	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr3:134516800-134517800	Flanking Active TSS	Fetal Brain Female	brain
13	chr3:134516800-134520400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:134517000-134517600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr3:134517000-134518000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:134517000-134519000	Enhancers	Fetal Brain Male	brain
17	chr3:134517200-134517600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:134517200-134517600	Enhancers	Brain Anterior Caudate	brain
19	chr3:134517200-134517800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:134517200-134518200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:134517200-134519600	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:134517200-134526600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:134517400-134517600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:134517400-134517600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr3:134517400-134517800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr3:134517400-134518800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
27	chr3:134517400-134523600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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