Variant report

Variant	rs11921721
Chromosome Location	chr3:134518101-134518102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11711187	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11720040	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs13071550	0.83[EUR][1000 genomes]
rs13084850	0.86[EUR][1000 genomes]
rs1913685	0.82[CEU][hapmap]
rs2018483	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs34239708	0.90[EUR][1000 genomes]
rs34649027	0.90[EUR][1000 genomes]
rs34740861	0.90[EUR][1000 genomes]
rs34901704	0.90[EUR][1000 genomes]
rs35910633	0.98[EUR][1000 genomes]
rs4955503	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134515800-134518400	Weak transcription	Aorta	Aorta
2	chr3:134515800-134523600	Weak transcription	Pancreas	Pancrea
3	chr3:134516400-134518600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr3:134516400-134519400	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr3:134516800-134520400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:134517000-134519000	Enhancers	Fetal Brain Male	brain
7	chr3:134517200-134518200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134517200-134519600	Enhancers	Rectal Smooth Muscle	rectum
9	chr3:134517200-134526600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:134517400-134518800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
11	chr3:134517400-134523600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:134517600-134518200	Enhancers	Dnd41	blood
13	chr3:134517600-134519600	Enhancers	Psoas Muscle	Psoas
14	chr3:134517600-134520000	Enhancers	NHDF-Ad	bronchial
15	chr3:134517600-134526200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:134517800-134518200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:134517800-134518200	Enhancers	Adipose Nuclei	Adipose
18	chr3:134517800-134518200	Enhancers	Brain Germinal Matrix	brain
19	chr3:134517800-134518200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:134517800-134518200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:134517800-134518600	Active TSS	Fetal Brain Female	brain
22	chr3:134517800-134518600	Bivalent Enhancer	HSMMtube	muscle
23	chr3:134517800-134518600	Enhancers	Osteobl	bone
24	chr3:134517800-134518800	Enhancers	Brain Anterior Caudate	brain
25	chr3:134517800-134519000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:134518000-134518200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:134518000-134518600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:134518000-134518600	Enhancers	Colon Smooth Muscle	Colon
29	chr3:134518000-134518800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:134518000-134519600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:134518000-134520600	Active TSS	GM12878-XiMat	blood

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