Variant report

Variant	rs1913685
Chromosome Location	chr3:134536972-134536973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11720040	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs11921721	0.82[CEU][hapmap]
rs2018483	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs4955503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439523	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6439524	0.82[ASW][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.93[LWK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134529600-134541800	Weak transcription	Fetal Brain Female	brain
2	chr3:134529600-134542600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134529600-134546400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:134530000-134540800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:134530800-134541000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:134531200-134537800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:134533400-134537400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:134533600-134537000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:134534600-134537000	Enhancers	Fetal Muscle Leg	muscle
10	chr3:134534800-134546000	Weak transcription	Right Atrium	heart
11	chr3:134535200-134537000	Enhancers	Psoas Muscle	Psoas
12	chr3:134535600-134537200	Enhancers	GM12878-XiMat	blood
13	chr3:134535800-134540800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:134536800-134537000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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