Variant report

Variant	rs11720040
Chromosome Location	chr3:134524723-134524724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134524382..134526892-chr3:134533040..134534837,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11711187	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921721	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs13084850	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1913685	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs2018483	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34239708	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34649027	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34740861	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34901704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35910633	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4955503	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134517200-134526600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134517600-134526200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:134518400-134526200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:134518400-134528400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:134518600-134528200	Weak transcription	Fetal Brain Female	brain
6	chr3:134519000-134529000	Weak transcription	Fetal Brain Male	brain
7	chr3:134520400-134525600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:134522400-134527800	Enhancers	GM12878-XiMat	blood
9	chr3:134523400-134524800	Enhancers	Psoas Muscle	Psoas
10	chr3:134523600-134527200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:134523800-134526200	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:134523800-134528400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:134523800-134529800	Weak transcription	Pancreas	Pancrea
14	chr3:134524200-134524800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:134524400-134525600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:134524400-134526400	Enhancers	Brain Anterior Caudate	brain
17	chr3:134524600-134524800	Enhancers	Spleen	Spleen
18	chr3:134524600-134525200	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:134524600-134528600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:134524600-134528800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:134524600-134530600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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