Variant report

Variant	rs13072135
Chromosome Location	chr3:156813360-156813361
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156811094..156814889-chr3:156831563..156835673,4	K562	blood:
2	chr3:156813189..156821079-chr3:156821537..156824673,9	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13072757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094970	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34122975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35649103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59634016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156807600-156815800	Weak transcription	HSMMtube	muscle
2	chr3:156807800-156816200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156807800-156822000	Weak transcription	Aorta	Aorta
4	chr3:156808600-156821600	Weak transcription	Small Intestine	intestine
5	chr3:156810400-156817600	Weak transcription	Lung	lung
6	chr3:156810600-156816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:156811000-156823000	Weak transcription	Spleen	Spleen
9	chr3:156811200-156815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:156811200-156817800	Weak transcription	Psoas Muscle	Psoas
11	chr3:156811400-156818600	Weak transcription	Fetal Intestine Large	intestine
12	chr3:156811600-156815600	Weak transcription	GM12878-XiMat	blood
13	chr3:156811800-156821000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:156812200-156813400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:156812200-156813400	Flanking Active TSS	Fetal Heart	heart
16	chr3:156812200-156813600	Enhancers	HSMM	muscle
17	chr3:156812200-156814800	Enhancers	HepG2	liver
18	chr3:156812600-156813600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:156812600-156815400	Enhancers	Left Ventricle	heart
20	chr3:156812800-156813400	Enhancers	Right Atrium	heart
21	chr3:156812800-156816200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:156812800-156816600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:156812800-156817000	Weak transcription	K562	blood
24	chr3:156812800-156818000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:156813000-156813400	Flanking Active TSS	Right Ventricle	heart
26	chr3:156813000-156814400	Weak transcription	Pancreas	Pancrea
27	chr3:156813000-156815600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:156813000-156815600	Weak transcription	NH-A	brain
29	chr3:156813000-156816200	Weak transcription	HMEC	breast
30	chr3:156813000-156818400	Weak transcription	Fetal Intestine Small	intestine
31	chr3:156813200-156815800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:156813200-156816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:156813200-156816200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:156813200-156816200	Weak transcription	NHEK	skin
35	chr3:156813200-156816200	Weak transcription	NHLF	lung
36	chr3:156813200-156817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links