Variant report

Variant	rs34122975
Chromosome Location	chr3:156812844-156812845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156811094..156814889-chr3:156831563..156835673,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13072135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094970	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35649103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59634016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156807600-156815800	Weak transcription	HSMMtube	muscle
2	chr3:156807800-156813000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:156807800-156816200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:156807800-156822000	Weak transcription	Aorta	Aorta
5	chr3:156808600-156821600	Weak transcription	Small Intestine	intestine
6	chr3:156810400-156817600	Weak transcription	Lung	lung
7	chr3:156810600-156813000	Active TSS	Right Ventricle	heart
8	chr3:156810600-156816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:156811000-156823000	Weak transcription	Spleen	Spleen
11	chr3:156811200-156815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:156811200-156817800	Weak transcription	Psoas Muscle	Psoas
13	chr3:156811400-156818600	Weak transcription	Fetal Intestine Large	intestine
14	chr3:156811600-156813200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:156811600-156813200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:156811600-156815600	Weak transcription	GM12878-XiMat	blood
17	chr3:156811800-156813200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:156811800-156813200	Enhancers	NHEK	skin
19	chr3:156811800-156821000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:156812200-156813000	Enhancers	HMEC	breast
21	chr3:156812200-156813200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:156812200-156813200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:156812200-156813200	Enhancers	NHLF	lung
24	chr3:156812200-156813400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:156812200-156813400	Flanking Active TSS	Fetal Heart	heart
26	chr3:156812200-156813600	Enhancers	HSMM	muscle
27	chr3:156812200-156814800	Enhancers	HepG2	liver
28	chr3:156812400-156813000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:156812400-156813000	Enhancers	Fetal Intestine Small	intestine
30	chr3:156812400-156813000	Enhancers	Pancreas	Pancrea
31	chr3:156812400-156813000	Enhancers	HUVEC	blood vessel
32	chr3:156812400-156813000	Enhancers	NH-A	brain
33	chr3:156812400-156813200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr3:156812600-156813200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr3:156812600-156813600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:156812600-156815400	Enhancers	Left Ventricle	heart
37	chr3:156812800-156813400	Enhancers	Right Atrium	heart
38	chr3:156812800-156816200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:156812800-156816600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:156812800-156817000	Weak transcription	K562	blood
41	chr3:156812800-156818000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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