The 2.0 version of rSNPBase

Variant report

Variant rs13072665
Chromosome Location chr3:69993313-69993314
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:69964400-70008400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:69975200-69997000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr3:69975200-70008400 Weak transcription Rectal Smooth Muscle rectum
4 chr3:69975800-70008400 Weak transcription Aorta Aorta
5 chr3:69975800-70013800 Weak transcription Psoas Muscle Psoas
6 chr3:69978600-70014000 Weak transcription Esophagus oesophagus
7 chr3:69979800-70008400 Weak transcription Right Ventricle heart
8 chr3:69981800-70008200 Weak transcription Stomach Mucosa stomach
9 chr3:69981800-70016800 Weak transcription K562 blood
10 chr3:69983400-70008400 Weak transcription Fetal Muscle Leg muscle
11 chr3:69984000-70008600 Weak transcription Fetal Kidney kidney
12 chr3:69985400-70007000 Weak transcription Fetal Stomach stomach
13 chr3:69985600-70008400 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr3:69985800-69998200 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr3:69987200-69993400 Weak transcription Brain Inferior Temporal Lobe brain
16 chr3:69987200-70008400 Weak transcription Lung lung
17 chr3:69987600-70008400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr3:69987800-70008400 Weak transcription Gastric stomach
19 chr3:69987800-70008400 Weak transcription Pancreas Pancrea
20 chr3:69988400-70008800 Weak transcription Fetal Lung lung
21 chr3:69989200-69993800 Strong transcription Ovary ovary
22 chr3:69990800-69994000 Transcr. at gene 5' and 3' Foreskin Melanocyte Primary Cells skin03 Skin
23 chr3:69990800-70015600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr3:69991200-70008600 Weak transcription NHLF lung
25 chr3:69991400-69998200 Weak transcription Primary monocytes fromperipheralblood blood
26 chr3:69992000-69997000 Weak transcription Colon Smooth Muscle Colon
27 chr3:69992000-69997000 Weak transcription A549 lung
28 chr3:69992200-69997000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr3:69992200-69998200 Weak transcription Monocytes-CD14+_RO01746 blood
30 chr3:69992200-69998400 Weak transcription Adipose Nuclei Adipose
31 chr3:69992400-69998400 Enhancers Brain Hippocampus Middle brain
32 chr3:69992600-69994800 Weak transcription Left Ventricle heart
33 chr3:69992600-69998200 Weak transcription Stomach Smooth Muscle stomach
34 chr3:69992800-69993800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
35 chr3:69992800-69996000 Enhancers Brain Anterior Caudate brain
36 chr3:69993000-69994200 Enhancers Fetal Heart heart
37 chr3:69993000-69996000 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr3:69993000-69998000 Enhancers Brain Angular Gyrus brain
39 chr3:69993000-69998000 Enhancers Brain Cingulate Gyrus brain
40 chr3:69993000-69998000 Enhancers Brain Substantia Nigra brain
41 chr3:69993200-69994200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
42 chr3:69993200-69996200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015