Variant report

Variant	rs6809108
Chromosome Location	chr3:70044334-70044335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:70044164-70044443	GM12891	blood:	n/a	chr3:70044296-70044305
2	IRF1	chr3:70044295-70044339	K562	blood:	n/a	chr3:70044296-70044306 chr3:70044296-70044307 chr3:70044295-70044304 chr3:70044297-70044308 chr3:70044296-70044310
3	SPI1	chr3:70044168-70044378	GM12878	blood:	n/a	chr3:70044296-70044305

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70041451..70045130-chr3:70045704..70051320,7	K562	blood:

Variant related genes	Relation type
ENSG00000240405	TF binding region
ENSG00000240405	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13062402	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13064441	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069643	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13071266	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13072665	1.00[CEU][hapmap]
rs13077347	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13080062	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081786	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13086024	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13094951	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13099113	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2131123	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34313089	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34514277	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34584406	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35066679	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35286473	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35527992	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35541760	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36042309	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66533134	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6773284	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs73102056	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73102066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73104062	0.89[AMR][1000 genomes]
rs73104068	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70037600-70045200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:70041200-70061000	Weak transcription	Aorta	Aorta
3	chr3:70041600-70047800	Weak transcription	Fetal Brain Male	brain
4	chr3:70043600-70045200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:70044200-70044600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links