Variant report

Variant	rs73102056
Chromosome Location	chr3:70061623-70061624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MITF-1	chr3:70061508-70061749	ENSG00000240405
2	lnc-MITF-1	chr3:70061508-70061749	ENSG00000240405
3	lnc-MITF-1	chr3:70061508-70061749	XLOC_002696
4	lnc-MITF-1	chr3:70061568-70061749	NONHSAT090374
5	lnc-MITF-1	chr3:70061508-70061749	NR_110000

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13062402	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13064441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13069643	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13071266	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13077347	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13080062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13081786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13086024	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13094951	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13099113	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2131123	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34313089	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34514277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34584406	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35066679	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35286473	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35527992	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35541760	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36042309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66533134	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6809108	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73102066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73104062	0.94[AMR][1000 genomes]
rs73104068	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3507809	chr3:70058262-70066160	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3507810	chr3:70058712-70066010	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3507811	chr3:70058712-70066010	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70061000-70061800	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:70061400-70061800	Active TSS	Aorta	Aorta
3	chr3:70061600-70063200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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