Variant report

Variant	rs35527992
Chromosome Location	chr3:70126015-70126016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70123287..70127248-chr3:70127546..70130519,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13062402	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13064441	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13069643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13071266	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13077347	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13080062	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13081786	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13086024	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13094951	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13099113	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2131123	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34313089	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34514277	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34584406	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35066679	0.81[EUR][1000 genomes]
rs35286473	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35541760	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36001908	0.85[ASN][1000 genomes]
rs36042309	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66533134	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6809108	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71298324	0.86[ASN][1000 genomes]
rs73102056	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73102066	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73104062	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73104068	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70121600-70127000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:70121600-70128200	Weak transcription	Fetal Stomach	stomach
3	chr3:70124200-70126200	Enhancers	Fetal Heart	heart
4	chr3:70125200-70126200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:70125200-70126200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:70125200-70126400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:70125400-70126200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:70125800-70141200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links