Variant report

Variant	rs36042309
Chromosome Location	chr3:70050843-70050844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:70013897..70016716-chr3:70049706..70051313,2	K562	blood:
2	chr3:69743330..69744905-chr3:70049287..70050873,2	K562	blood:
3	chr3:69370120..69372204-chr3:70049315..70051273,2	K562	blood:

Variant related genes	Relation type
ENSG00000114541	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13062402	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13064441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069643	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13071266	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13077347	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13080062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13086024	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13094951	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13099113	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2131123	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34313089	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34514277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34584406	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35066679	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35286473	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35527992	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35541760	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66533134	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6809108	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73102056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73102066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73104062	0.94[AMR][1000 genomes]
rs73104068	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70041200-70061000	Weak transcription	Aorta	Aorta
2	chr3:70048000-70051200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:70049200-70051400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:70050000-70051800	Enhancers	Brain Substantia Nigra	brain
5	chr3:70050200-70051200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:70050600-70051200	Enhancers	K562	blood
7	chr3:70050800-70051000	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr3:70050800-70051000	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr3:70050800-70051000	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr3:70050800-70051200	Enhancers	Brain Angular Gyrus	brain
11	chr3:70050800-70051200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links