Variant report
| Variant | rs35066679 |
|---|---|
| Chromosome Location | chr3:70029423-70029424 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs13062402 | 0.86[EUR][1000 genomes] |
| rs13064441 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13067653 | 0.84[AMR][1000 genomes] |
| rs13069643 | 0.81[EUR][1000 genomes] |
| rs13071266 | 0.84[EUR][1000 genomes] |
| rs13077347 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13080062 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13081786 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13086024 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13094951 | 0.84[EUR][1000 genomes] |
| rs13099113 | 0.84[EUR][1000 genomes] |
| rs2131123 | 0.87[EUR][1000 genomes] |
| rs34313089 | 0.87[EUR][1000 genomes] |
| rs34514277 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34584406 | 0.87[EUR][1000 genomes] |
| rs35286473 | 0.87[EUR][1000 genomes] |
| rs35527992 | 0.81[EUR][1000 genomes] |
| rs35541760 | 0.87[EUR][1000 genomes] |
| rs36042309 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs66533134 | 0.87[EUR][1000 genomes] |
| rs6809108 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73102056 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73102066 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73104068 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533396 | chr3:69964029-70538306 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:70029400-70030800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
