Variant report

Variant	rs13076604
Chromosome Location	chr3:60561326-60561327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17669257	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56101492	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9845479	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60555400-60573600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:60558800-60562200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:60559000-60561600	Weak transcription	Pancreas	Pancrea
4	chr3:60559200-60561600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:60559400-60561600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:60559600-60565200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:60559800-60561800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:60559800-60564600	Weak transcription	NHEK	skin
9	chr3:60559800-60564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:60560000-60564600	Weak transcription	HMEC	breast
11	chr3:60560000-60564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:60560200-60561400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:60560200-60564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:60560200-60565400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:60560400-60564800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:60561200-60561600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:60561200-60561800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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