Variant report

Variant	rs13079706
Chromosome Location	chr3:111995872-111995873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111987883..111989746-chr3:111993499..111996170,2	K562	blood:
2	chr3:111993821..111999199-chr3:111999738..112003552,5	K562	blood:
3	chr3:111994958..111997172-chr3:111998544..112001325,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10511306	0.82[CEU][hapmap]
rs10511307	0.82[CEU][hapmap];0.86[TSI][hapmap]
rs10511308	0.91[CEU][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs10804496	0.91[EUR][1000 genomes]
rs10934154	0.90[EUR][1000 genomes]
rs10934155	0.91[EUR][1000 genomes]
rs10934156	0.87[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs10934157	0.91[EUR][1000 genomes]
rs10934159	0.91[EUR][1000 genomes]
rs10934160	0.91[EUR][1000 genomes]
rs10934161	0.91[EUR][1000 genomes]
rs1119339	0.89[EUR][1000 genomes]
rs11917180	0.85[EUR][1000 genomes]
rs11918129	0.91[EUR][1000 genomes]
rs11919745	0.93[EUR][1000 genomes]
rs11919901	0.91[CEU][hapmap]
rs11924882	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs11926649	0.91[EUR][1000 genomes]
rs11928130	0.82[CEU][hapmap]
rs12053863	0.89[JPT][hapmap];0.91[YRI][hapmap]
rs12486083	0.91[EUR][1000 genomes]
rs13059342	0.91[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs13060187	0.80[CEU][hapmap]
rs13061801	0.91[CEU][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs13069541	0.91[EUR][1000 genomes]
rs13072156	0.91[EUR][1000 genomes]
rs13077603	0.91[CEU][hapmap]
rs13078713	0.95[CEU][hapmap]
rs13078927	0.91[EUR][1000 genomes]
rs13080128	0.85[EUR][1000 genomes]
rs13086468	0.87[EUR][1000 genomes]
rs13087387	0.91[CEU][hapmap]
rs13089316	0.91[CEU][hapmap];0.95[TSI][hapmap]
rs13090086	0.91[EUR][1000 genomes]
rs13090344	0.91[CEU][hapmap]
rs13090432	0.91[EUR][1000 genomes]
rs13090629	0.91[EUR][1000 genomes]
rs13091981	0.91[EUR][1000 genomes]
rs13092211	0.89[EUR][1000 genomes]
rs13092810	0.91[EUR][1000 genomes]
rs13095956	0.91[EUR][1000 genomes]
rs13096794	0.89[EUR][1000 genomes]
rs13097307	0.91[EUR][1000 genomes]
rs1388855	0.82[CEU][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap]
rs1586874	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1602673	0.89[EUR][1000 genomes]
rs1826393	0.88[EUR][1000 genomes]
rs1948404	0.82[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs34399151	0.91[EUR][1000 genomes]
rs4234414	0.91[EUR][1000 genomes]
rs4260401	0.90[EUR][1000 genomes]
rs4274721	0.91[EUR][1000 genomes]
rs4279068	0.91[EUR][1000 genomes]
rs4279069	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs4440097	0.91[EUR][1000 genomes]
rs4444687	0.91[EUR][1000 genomes]
rs4481127	0.89[EUR][1000 genomes]
rs4496447	0.89[EUR][1000 genomes]
rs4552323	0.91[EUR][1000 genomes]
rs4564948	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4592997	0.91[EUR][1000 genomes]
rs4602356	0.91[EUR][1000 genomes]
rs4613425	0.89[EUR][1000 genomes]
rs4618193	0.90[EUR][1000 genomes]
rs4682099	0.91[EUR][1000 genomes]
rs4682100	0.95[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs4682386	0.91[EUR][1000 genomes]
rs4682387	0.91[EUR][1000 genomes]
rs4682388	0.91[EUR][1000 genomes]
rs4682389	0.91[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs4682390	0.91[EUR][1000 genomes]
rs57890482	0.91[EUR][1000 genomes]
rs57964682	0.91[EUR][1000 genomes]
rs6781137	0.91[CEU][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs879652	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13079706	CD200	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111972200-111999000	Weak transcription	Left Ventricle	heart

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