Variant report

Variant	rs13060187
Chromosome Location	chr3:111922163-111922164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111916552..111919160-chr3:111921905..111924645,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10511306	0.80[CEU][hapmap]
rs10511307	0.80[CEU][hapmap]
rs10511308	0.88[CEU][hapmap]
rs10511309	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934138	0.87[ASN][1000 genomes]
rs10934156	0.83[CEU][hapmap]
rs11714273	0.89[ASN][1000 genomes]
rs11914637	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.91[ASN][1000 genomes]
rs11919901	0.88[CEU][hapmap]
rs11924882	0.88[CEU][hapmap]
rs11928130	0.80[CEU][hapmap]
rs11928353	0.94[ASN][1000 genomes]
rs12054138	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493824	0.94[ASW][hapmap];0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[LWK][hapmap];0.82[MKK][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629465	0.84[ASN][1000 genomes]
rs12634031	0.98[ASN][1000 genomes]
rs13059342	0.87[CEU][hapmap]
rs13061801	0.88[CEU][hapmap]
rs13064510	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067030	0.92[ASN][1000 genomes]
rs13069887	0.88[ASW][hapmap];0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[LWK][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077603	0.87[CEU][hapmap]
rs13078713	0.90[CEU][hapmap]
rs13079706	0.80[CEU][hapmap]
rs13079745	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087387	0.88[CEU][hapmap]
rs13088733	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13089316	0.88[CEU][hapmap]
rs13090344	0.88[CEU][hapmap]
rs13314792	0.96[ASN][1000 genomes]
rs13315900	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13327160	0.87[ASN][1000 genomes]
rs13327165	0.93[ASN][1000 genomes]
rs1388855	0.80[CEU][hapmap]
rs1586874	0.88[CEU][hapmap]
rs1602670	0.91[ASN][1000 genomes]
rs1602671	0.88[ASN][1000 genomes]
rs1948404	0.80[CEU][hapmap]
rs2029636	0.96[ASN][1000 genomes]
rs2029637	0.98[ASN][1000 genomes]
rs2046983	0.89[ASN][1000 genomes]
rs2087767	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2087768	0.92[ASN][1000 genomes]
rs2131233	0.91[ASN][1000 genomes]
rs2399405	0.89[ASN][1000 genomes]
rs3929356	0.98[ASN][1000 genomes]
rs4279069	0.88[CEU][hapmap]
rs4352358	0.94[ASN][1000 genomes]
rs4438629	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4577433	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586779	0.84[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682086	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[ASN][1000 genomes]
rs4682090	0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[ASN][1000 genomes]
rs4682361	0.92[ASN][1000 genomes]
rs4682365	0.92[ASN][1000 genomes]
rs4682372	0.94[ASN][1000 genomes]
rs4682374	0.88[ASW][hapmap];0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[LWK][hapmap];0.82[MKK][hapmap];0.94[ASN][1000 genomes]
rs4682389	0.88[CEU][hapmap]
rs62277462	0.90[ASN][1000 genomes]
rs62279470	0.88[ASN][1000 genomes]
rs6438039	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764064	0.84[ASN][1000 genomes]
rs6764248	0.98[ASN][1000 genomes]
rs6766622	0.87[ASN][1000 genomes]
rs6766996	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767017	0.89[ASN][1000 genomes]
rs67704344	0.91[ASN][1000 genomes]
rs6773161	0.96[ASN][1000 genomes]
rs6781137	0.88[CEU][hapmap]
rs6784524	0.98[ASN][1000 genomes]
rs6791042	0.89[ASN][1000 genomes]
rs6805795	0.98[ASN][1000 genomes]
rs6808920	0.97[ASN][1000 genomes]
rs7616020	0.91[ASN][1000 genomes]
rs7622733	0.90[ASN][1000 genomes]
rs9288937	0.87[ASN][1000 genomes]
rs9288938	0.98[ASN][1000 genomes]
rs9288943	0.87[ASN][1000 genomes]
rs958695	0.88[CEU][hapmap];0.85[CHB][hapmap];0.94[ASN][1000 genomes]
rs9818716	0.91[ASN][1000 genomes]
rs9821935	0.98[ASN][1000 genomes]
rs9827894	0.96[ASN][1000 genomes]
rs9837375	0.90[ASN][1000 genomes]
rs9844769	0.87[ASN][1000 genomes]
rs9851173	0.85[ASN][1000 genomes]
rs9861756	0.89[ASN][1000 genomes]
rs9871650	0.86[ASN][1000 genomes]
rs9875860	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111913000-111923200	Weak transcription	Pancreas	Pancrea
2	chr3:111913200-111930000	Weak transcription	Left Ventricle	heart
3	chr3:111915400-111923400	Weak transcription	Aorta	Aorta
4	chr3:111919000-111922600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:111919600-111925200	Weak transcription	Fetal Heart	heart

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