Variant report

Variant	rs6764064
Chromosome Location	chr3:111930300-111930301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10511309	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11914637	0.86[EUR][1000 genomes]
rs11928353	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12054138	0.82[ASN][1000 genomes]
rs12493824	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12634031	0.82[ASN][1000 genomes]
rs13060187	0.84[ASN][1000 genomes]
rs13064510	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13067030	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13069887	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13079745	0.84[ASN][1000 genomes]
rs13314792	0.80[ASN][1000 genomes]
rs13315900	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13327160	0.80[ASN][1000 genomes]
rs1602670	0.86[EUR][1000 genomes]
rs2029636	0.80[ASN][1000 genomes]
rs2029637	0.82[ASN][1000 genomes]
rs2087767	0.80[ASN][1000 genomes]
rs3929356	0.82[ASN][1000 genomes]
rs4352358	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4438629	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4577433	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4586779	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4682086	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4682090	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4682361	0.86[EUR][1000 genomes]
rs4682372	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4682374	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6438039	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6764248	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6766996	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67704344	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6773161	0.80[ASN][1000 genomes]
rs6784524	0.82[ASN][1000 genomes]
rs6805795	0.82[ASN][1000 genomes]
rs6808920	0.81[ASN][1000 genomes]
rs9288938	0.82[ASN][1000 genomes]
rs958695	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9821935	0.82[ASN][1000 genomes]
rs9827894	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3437811	chr3:111929311-111950399	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111930000-111930400	Weak transcription	Aorta	Aorta

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