Variant report

Variant	rs13079745
Chromosome Location	chr3:111927834-111927835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10511309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934138	0.87[ASN][1000 genomes]
rs11711153	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11712289	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11714273	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11715536	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11914637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11928353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12054138	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494678	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12629465	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12634031	0.98[ASN][1000 genomes]
rs13060187	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064510	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13069887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078713	0.89[CEU][hapmap]
rs13088733	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13314792	0.96[ASN][1000 genomes]
rs13314977	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs13315900	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13327160	0.87[ASN][1000 genomes]
rs13327165	0.93[ASN][1000 genomes]
rs1602670	0.91[ASN][1000 genomes]
rs1602671	0.88[ASN][1000 genomes]
rs1844995	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2029636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2029637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2046983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2087767	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2087768	0.92[ASN][1000 genomes]
rs2131233	0.91[ASN][1000 genomes]
rs2399405	0.89[ASN][1000 genomes]
rs3929356	0.98[ASN][1000 genomes]
rs4352358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4438629	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4577433	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586779	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4682090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4682361	0.92[ASN][1000 genomes]
rs4682365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4682372	0.94[ASN][1000 genomes]
rs4682374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4682379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4682391	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs5013874	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62277462	0.90[ASN][1000 genomes]
rs62279470	0.88[ASN][1000 genomes]
rs6438039	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6764064	0.84[ASN][1000 genomes]
rs6764248	0.98[ASN][1000 genomes]
rs6766122	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6766622	0.87[ASN][1000 genomes]
rs6766996	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767017	0.89[ASN][1000 genomes]
rs6768523	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs67704344	0.91[ASN][1000 genomes]
rs6773161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6784524	0.98[ASN][1000 genomes]
rs6791042	0.89[ASN][1000 genomes]
rs6805795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6807950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6808920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7616020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7622733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7642447	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9288937	0.87[ASN][1000 genomes]
rs9288938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9288943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs958695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9809174	0.81[JPT][hapmap]
rs9818716	0.91[ASN][1000 genomes]
rs9821935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9827371	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9827894	0.96[ASN][1000 genomes]
rs9828502	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9837375	0.90[ASN][1000 genomes]
rs9844769	0.87[ASN][1000 genomes]
rs9851173	0.85[ASN][1000 genomes]
rs9861756	0.89[ASN][1000 genomes]
rs9871650	0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs9872691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9875860	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111913200-111930000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links