Variant report

Variant	rs11715536
Chromosome Location	chr3:111938180-111938181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10511309	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11711153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap]
rs11712289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11714273	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs11914637	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11928353	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12493824	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12494678	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12629465	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13067030	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs13069887	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs13079745	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs13314268	0.95[YRI][hapmap]
rs13314977	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs1844995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs2029636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs2029637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap]
rs2046983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs2131232	0.95[YRI][hapmap]
rs4352358	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4568109	1.00[CEU][hapmap]
rs4568110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs4586779	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs4682086	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4682090	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4682365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs4682374	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4682379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap]
rs4682391	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs5013874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6438057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs6766122	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs6768523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs6773161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs6805795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6807950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6808920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs7616020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs7622733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs7642447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs7642496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs9288938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs9288943	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs958695	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9821935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs9827371	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9828502	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9835431	0.95[YRI][hapmap]
rs9871650	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[YRI][hapmap]
rs9872691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3437811	chr3:111929311-111950399	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111937000-111942800	Weak transcription	Left Ventricle	heart

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