Variant report

Variant	rs2131232
Chromosome Location	chr3:111862034-111862035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111859837..111862167-chr3:112256624..112258984,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144848	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11711153	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs11712289	0.89[CEU][hapmap]
rs11714273	0.85[CEU][hapmap];0.80[GIH][hapmap]
rs11715536	0.95[YRI][hapmap]
rs11719485	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12494678	0.90[CEU][hapmap]
rs12634031	0.84[EUR][1000 genomes]
rs13314268	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13314792	0.83[EUR][1000 genomes]
rs13314977	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs1492482	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1492487	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1602671	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1844995	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs2029636	0.90[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs2029637	0.85[CEU][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs2046983	0.85[CEU][hapmap];0.85[GIH][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes]
rs2087768	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2172314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172315	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2399405	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3929356	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4568109	0.85[CEU][hapmap]
rs4568110	0.85[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs4682356	0.80[ASN][1000 genomes]
rs4682365	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4682379	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs4682391	0.90[CEU][hapmap]
rs5013874	0.85[CEU][hapmap]
rs62277462	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6438057	0.85[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs6766122	0.85[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs6766622	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6767017	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6768523	0.85[ASW][hapmap];0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs6773161	0.85[ASW][hapmap];0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap];0.83[EUR][1000 genomes]
rs6784524	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6791042	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6805795	0.83[CEU][hapmap];0.80[CHB][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6807950	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs6808920	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7616020	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs7622733	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7642447	0.85[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs7642496	0.85[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs9288937	0.84[EUR][1000 genomes]
rs9288938	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs9288943	0.82[CHB][hapmap]
rs966032	0.90[CEU][hapmap]
rs9821935	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs9827894	0.84[EUR][1000 genomes]
rs9828502	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs9835431	0.84[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9851173	0.85[EUR][1000 genomes]
rs9861756	0.86[EUR][1000 genomes]
rs9871650	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs9872691	0.85[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111852200-111863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111853400-111867400	Weak transcription	Gastric	stomach
3	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
4	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
5	chr3:111856400-111862400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:111858800-111862400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:111861800-111862400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:111862000-111863000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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