Variant report

Variant	rs1492487
Chromosome Location	chr3:111845521-111845522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11719485	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634031	0.82[EUR][1000 genomes]
rs13314268	0.94[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13314792	0.81[EUR][1000 genomes]
rs1492482	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1602671	0.84[EUR][1000 genomes]
rs2029636	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs2029637	0.82[EUR][1000 genomes]
rs2046983	0.84[EUR][1000 genomes]
rs2087768	0.84[EUR][1000 genomes]
rs2131232	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2172314	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2172315	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2399405	0.84[EUR][1000 genomes]
rs3929356	0.82[EUR][1000 genomes]
rs4682365	0.84[EUR][1000 genomes]
rs62277462	0.84[EUR][1000 genomes]
rs6766622	0.81[EUR][1000 genomes]
rs6767017	0.84[EUR][1000 genomes]
rs6773161	0.81[EUR][1000 genomes]
rs6784524	0.82[EUR][1000 genomes]
rs6791042	0.84[EUR][1000 genomes]
rs6805795	0.82[EUR][1000 genomes]
rs6808920	0.81[EUR][1000 genomes]
rs7622733	0.84[EUR][1000 genomes]
rs9288937	0.82[EUR][1000 genomes]
rs9288938	0.82[EUR][1000 genomes]
rs966032	0.84[CEU][hapmap]
rs9821935	0.82[EUR][1000 genomes]
rs9827894	0.82[EUR][1000 genomes]
rs9835431	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851173	0.83[EUR][1000 genomes]
rs9861756	0.84[EUR][1000 genomes]
rs9871650	0.82[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
4	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:111830600-111853200	Weak transcription	Lung	lung
6	chr3:111834200-111853800	Weak transcription	Fetal Intestine Small	intestine
7	chr3:111834400-111848000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:111835800-111849600	Weak transcription	Small Intestine	intestine
9	chr3:111836200-111849200	Weak transcription	Aorta	Aorta
10	chr3:111836600-111846400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:111839000-111845600	Weak transcription	Adipose Nuclei	Adipose
12	chr3:111839000-111853000	Weak transcription	Left Ventricle	heart
13	chr3:111839600-111847400	Weak transcription	HMEC	breast
14	chr3:111840800-111847000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:111840800-111849200	Weak transcription	Gastric	stomach
16	chr3:111840800-111855800	Weak transcription	NH-A	brain
17	chr3:111841000-111846600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:111841200-111845600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:111842600-111846400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:111842800-111846000	Genic enhancers	Fetal Thymus	thymus
21	chr3:111842800-111849200	Weak transcription	Pancreas	Pancrea
22	chr3:111843600-111845600	Enhancers	HSMMtube	muscle
23	chr3:111843600-111846000	Enhancers	Fetal Muscle Leg	muscle
24	chr3:111843600-111847000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:111843600-111848400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:111843600-111848400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr3:111843600-111849200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:111843600-111849800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
29	chr3:111843800-111845600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:111843800-111846800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:111843800-111848400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr3:111843800-111849000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr3:111843800-111849200	Enhancers	Primary hematopoietic stem cells	blood
34	chr3:111844000-111845800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:111844000-111846200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr3:111844000-111847000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:111844000-111847800	Enhancers	Fetal Kidney	kidney
38	chr3:111844000-111848600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr3:111844000-111848800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:111844200-111845600	Enhancers	H1 Cell Line	embryonic stem cell
41	chr3:111844200-111845800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:111844400-111845600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr3:111844400-111845600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:111844400-111847200	Enhancers	Fetal Heart	heart
45	chr3:111844400-111850000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr3:111844600-111845600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:111844600-111846400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:111844800-111845600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr3:111844800-111848800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr3:111844800-111855800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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