Variant report

Variant	rs13088733
Chromosome Location	chr3:111876573-111876574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10511309	0.94[ASN][1000 genomes]
rs10934138	0.81[ASN][1000 genomes]
rs11714273	0.83[ASN][1000 genomes]
rs11914637	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11928353	0.88[ASN][1000 genomes]
rs12054138	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12493824	0.94[ASN][1000 genomes]
rs12634031	0.91[ASN][1000 genomes]
rs13060187	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064510	0.94[ASN][1000 genomes]
rs13067030	0.86[ASN][1000 genomes]
rs13069887	0.94[ASN][1000 genomes]
rs13079745	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13314792	0.90[ASN][1000 genomes]
rs13315900	0.90[ASN][1000 genomes]
rs13327160	0.81[ASN][1000 genomes]
rs13327165	0.87[ASN][1000 genomes]
rs1602670	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1602671	0.95[ASN][1000 genomes]
rs2029636	0.90[ASN][1000 genomes]
rs2029637	0.91[ASN][1000 genomes]
rs2046983	0.95[ASN][1000 genomes]
rs2087767	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2087768	0.92[ASN][1000 genomes]
rs2131233	0.85[ASN][1000 genomes]
rs2399405	0.94[ASN][1000 genomes]
rs3929356	0.91[ASN][1000 genomes]
rs4352358	0.88[ASN][1000 genomes]
rs4438629	0.94[ASN][1000 genomes]
rs4577433	0.94[ASN][1000 genomes]
rs4586779	0.94[ASN][1000 genomes]
rs4682086	0.95[ASN][1000 genomes]
rs4682090	0.97[ASN][1000 genomes]
rs4682361	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682365	0.92[ASN][1000 genomes]
rs4682372	0.88[ASN][1000 genomes]
rs4682374	0.88[ASN][1000 genomes]
rs62277462	0.96[ASN][1000 genomes]
rs62279470	0.83[ASN][1000 genomes]
rs6438039	0.94[ASN][1000 genomes]
rs6764248	0.92[ASN][1000 genomes]
rs6766622	0.93[ASN][1000 genomes]
rs6766996	0.94[ASN][1000 genomes]
rs6767017	0.95[ASN][1000 genomes]
rs67704344	0.98[ASN][1000 genomes]
rs6773161	0.90[ASN][1000 genomes]
rs6784524	0.91[ASN][1000 genomes]
rs6791042	0.95[ASN][1000 genomes]
rs6805795	0.91[ASN][1000 genomes]
rs6808920	0.91[ASN][1000 genomes]
rs7616020	0.85[ASN][1000 genomes]
rs7622733	0.96[ASN][1000 genomes]
rs9288937	0.81[ASN][1000 genomes]
rs9288938	0.91[ASN][1000 genomes]
rs9288943	0.81[ASN][1000 genomes]
rs958695	0.88[ASN][1000 genomes]
rs9818716	0.85[ASN][1000 genomes]
rs9821935	0.91[ASN][1000 genomes]
rs9827894	0.90[ASN][1000 genomes]
rs9837375	0.84[ASN][1000 genomes]
rs9844769	0.81[ASN][1000 genomes]
rs9851173	0.91[ASN][1000 genomes]
rs9861756	0.94[ASN][1000 genomes]
rs9871650	0.80[ASN][1000 genomes]
rs9875860	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3360783	chr3:111876466-111876672	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111869000-111878400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111869400-111884400	Weak transcription	Left Ventricle	heart
3	chr3:111876400-111891400	Weak transcription	Right Ventricle	heart

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