Variant report

Variant	rs13080106
Chromosome Location	chr3:21687253-21687254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1352646	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1387822	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335811	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2335813	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3996211	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858341	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21683800-21706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:21685200-21688400	Enhancers	Left Ventricle	heart
3	chr3:21685600-21707200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:21685800-21688000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:21685800-21688000	Enhancers	Fetal Heart	heart
6	chr3:21685800-21688000	Enhancers	Fetal Muscle Leg	muscle
7	chr3:21686400-21687400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:21686400-21687400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:21686400-21687400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:21686400-21687400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:21686400-21687400	Enhancers	Fetal Lung	lung
12	chr3:21686400-21687400	Enhancers	HSMMtube	muscle
13	chr3:21686400-21687600	Enhancers	HSMM	muscle
14	chr3:21686400-21687800	Enhancers	NH-A	brain
15	chr3:21686600-21687400	Enhancers	Osteobl	bone
16	chr3:21686600-21688000	Enhancers	Pancreas	Pancrea
17	chr3:21686600-21688000	Enhancers	Right Ventricle	heart
18	chr3:21686800-21687400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:21687000-21687400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:21687200-21687400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:21687200-21687400	Weak transcription	Psoas Muscle	Psoas
22	chr3:21687200-21687400	Flanking Active TSS	NHLF	lung
23	chr3:21687200-21687600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:21687200-21687800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:21687200-21687800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:21687200-21688200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:21687200-21696400	Weak transcription	Aorta	Aorta
28	chr3:21687200-21701800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:21687200-21706200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:21687200-21709600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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