Variant report

Variant	rs1308141
Chromosome Location	chr1:151670686-151670687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:151669394-151671424	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr1:151670471-151671369	H1-neurons	neurons:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151670332..151672832-chr1:151688659..151691546,2	MCF-7	breast:
2	chr1:151665857..151667838-chr1:151669687..151671495,2	K562	blood:
3	chr1:151665857..151667896-chr1:151669494..151672428,3	K562	blood:
4	chr1:151658558..151661445-chr1:151669676..151671900,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CELF3-2	chr1:151670319-151670850	NONHSAT006406

No data

Variant related genes	Relation type
ENSG00000227045	TF binding region
ENSG00000159409	Chromatin interaction

rs_ID	r²[population]
rs1308144	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781412	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781435	1.00[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
4	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
5	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:151658000-151674800	Strong transcription	Fetal Muscle Leg	muscle
7	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
10	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:151664200-151672800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:151664200-151674200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:151664200-151674600	Strong transcription	Primary T cells from cord blood	blood
15	chr1:151664200-151674800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:151664400-151672200	Strong transcription	Fetal Intestine Small	intestine
18	chr1:151664400-151672400	Strong transcription	Fetal Intestine Large	intestine
19	chr1:151664400-151672400	Strong transcription	Thymus	Thymus
20	chr1:151664400-151674400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:151664400-151674600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr1:151664400-151674600	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr1:151664400-151674800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:151664400-151675400	Strong transcription	Stomach Smooth Muscle	stomach
25	chr1:151664600-151674200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr1:151664600-151674600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:151664600-151674600	Strong transcription	Fetal Thymus	thymus
28	chr1:151664600-151675000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:151664800-151672200	Strong transcription	Brain Germinal Matrix	brain
30	chr1:151664800-151674400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:151664800-151674600	Strong transcription	Adipose Nuclei	Adipose
32	chr1:151664800-151674600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:151664800-151674800	Strong transcription	Spleen	Spleen
34	chr1:151665000-151673200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:151665000-151673800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr1:151665000-151673800	Strong transcription	Brain Cingulate Gyrus	brain
37	chr1:151665000-151674000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:151665000-151674000	Strong transcription	Dnd41	blood
39	chr1:151665000-151674200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr1:151665000-151674400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:151665000-151674600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:151665000-151674600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:151665000-151674600	Strong transcription	Liver	Liver
44	chr1:151665000-151674600	Strong transcription	Fetal Lung	lung
45	chr1:151665000-151674600	Strong transcription	Lung	lung
46	chr1:151665000-151674800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:151665000-151674800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:151665000-151674800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr1:151665000-151674800	Strong transcription	Brain Angular Gyrus	brain
50	chr1:151665000-151674800	Strong transcription	Brain Anterior Caudate	brain

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