Variant report

Variant	rs1781412
Chromosome Location	chr1:151639862-151639863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151592097..151593693-chr1:151639266..151641709,2	K562	blood:
2	chr1:151635491..151637643-chr1:151639021..151640901,2	K562	blood:
3	chr1:151639625..151641159-chr1:151648178..151649812,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1308141	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1308144	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781435	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2843	chr1:151600069-151644709	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151587600-151640600	Weak transcription	Fetal Brain Male	brain
2	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
3	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:151594000-151652800	Weak transcription	Right Ventricle	heart
5	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
6	chr1:151610600-151652200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:151610600-151665000	Weak transcription	Lung	lung
8	chr1:151611600-151640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:151611600-151643800	Weak transcription	Pancreas	Pancrea
10	chr1:151611600-151668200	Weak transcription	Gastric	stomach
11	chr1:151612800-151652400	Weak transcription	HMEC	breast
12	chr1:151618000-151642600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:151622800-151643600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:151623000-151641600	Weak transcription	Ovary	ovary
16	chr1:151625600-151644800	Strong transcription	Dnd41	blood
17	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:151627200-151655600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:151627200-151659800	Weak transcription	Spleen	Spleen
20	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
21	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:151628000-151646000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:151628200-151652800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
25	chr1:151629200-151643400	Weak transcription	Brain Substantia Nigra	brain
26	chr1:151629600-151642400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:151631000-151643800	Weak transcription	A549	lung
28	chr1:151631200-151652000	Weak transcription	NHEK	skin
29	chr1:151631200-151652800	Weak transcription	NHLF	lung
30	chr1:151631400-151642400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr1:151632000-151643200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:151632200-151640600	Weak transcription	Brain Angular Gyrus	brain
33	chr1:151632200-151642000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:151632200-151643600	Weak transcription	Fetal Stomach	stomach
35	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:151632400-151640600	Weak transcription	Brain Anterior Caudate	brain
38	chr1:151632400-151643600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:151632400-151652600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
41	chr1:151632600-151641000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr1:151632600-151641400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr1:151632600-151653000	Weak transcription	HSMMtube	muscle
44	chr1:151632800-151640600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr1:151634000-151640800	Weak transcription	NH-A	brain
46	chr1:151634000-151652800	Weak transcription	NHDF-Ad	bronchial
47	chr1:151634200-151641200	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:151634600-151642000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr1:151634600-151657600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:151634800-151640400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links