Variant report
| Variant | rs13082046 |
|---|---|
| Chromosome Location | chr3:157339714-157339715 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:157338080..157340349-chr3:157341283..157344267,3 | K562 | blood: | |
| 2 | chr3:157338004..157341097-chr3:157342767..157346033,3 | K562 | blood: | |
| 3 | chr3:157338817..157342476-chr3:157350629..157354187,3 | K562 | blood: | |
| 4 | chr3:157338817..157341754-chr3:157350629..157353502,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1353890 | 0.80[ASN][1000 genomes] |
| rs1353891 | 0.80[ASN][1000 genomes] |
| rs1499787 | 0.88[ASN][1000 genomes] |
| rs16827940 | 0.88[ASN][1000 genomes] |
| rs16827950 | 0.88[ASN][1000 genomes] |
| rs16827960 | 0.88[ASN][1000 genomes] |
| rs16827971 | 0.86[ASN][1000 genomes] |
| rs16828010 | 0.82[ASN][1000 genomes] |
| rs16828014 | 0.82[ASN][1000 genomes] |
| rs2201964 | 0.82[ASN][1000 genomes] |
| rs57938898 | 0.80[ASN][1000 genomes] |
| rs60716309 | 0.80[ASN][1000 genomes] |
| rs73160639 | 0.88[ASN][1000 genomes] |
| rs73160643 | 0.86[ASN][1000 genomes] |
| rs73160646 | 0.84[ASN][1000 genomes] |
| rs73160650 | 0.82[ASN][1000 genomes] |
| rs73160652 | 0.80[ASN][1000 genomes] |
| rs9853104 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829767 | chr3:157306411-157490444 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv4081 | chr3:157318466-157347655 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2427927 | chr3:157338497-157343574 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2762351 | chr3:157338661-157341682 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv441845 | chr3:157339388-157341682 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3369725 | chr3:157339408-157343323 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:157338200-157342400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
