Variant report

Variant	rs1499787
Chromosome Location	chr3:157336118-157336119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157335915..157336574-chr3:157573741..157574603,2	MCF-7	breast:
2	chr3:157335809..157336775-chr3:157417803..157418800,5	MCF-7	breast:
3	chr3:157335520..157336463-chr3:157485031..157486016,2	MCF-7	breast:
4	chr3:157335896..157336476-chr3:157624213..157625166,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12629565	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12630293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632880	1.00[AFR][1000 genomes]
rs13082046	0.88[ASN][1000 genomes]
rs1353890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1353891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16827917	0.84[ASN][1000 genomes]
rs16827940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16827971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16828010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16828014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16828118	0.89[AMR][1000 genomes]
rs16828324	1.00[AFR][1000 genomes]
rs2047548	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2201964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3914481	1.00[AFR][1000 genomes]
rs4508733	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57938898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58033165	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58893334	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60716309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73160634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73160639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73160646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73160650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73160652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73160698	1.00[AFR][1000 genomes]
rs73162114	1.00[AFR][1000 genomes]
rs9853104	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157324600-157336400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:157335400-157336400	Bivalent Enhancer	HUVEC	blood vessel
3	chr3:157335400-157337200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:157335600-157336400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:157335600-157336400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:157335600-157336400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:157335600-157336400	Enhancers	Hela-S3	cervix
8	chr3:157335600-157336600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:157335800-157336200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:157335800-157336200	Enhancers	Osteobl	bone
11	chr3:157335800-157336400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157335800-157336400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:157335800-157336400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:157335800-157336400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:157335800-157336400	Enhancers	Dnd41	blood
16	chr3:157335800-157336400	Enhancers	NH-A	brain
17	chr3:157335800-157336800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:157336000-157336400	Enhancers	Brain Hippocampus Middle	brain
19	chr3:157336000-157336600	Enhancers	Brain Germinal Matrix	brain

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