Variant report

Variant	rs16828118
Chromosome Location	chr3:157398535-157398536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12629565	0.93[AMR][1000 genomes]
rs12630293	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12632880	0.89[AMR][1000 genomes]
rs1353890	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1353891	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1499787	0.89[AMR][1000 genomes]
rs16827940	0.89[AMR][1000 genomes]
rs16827950	0.89[AMR][1000 genomes]
rs16827960	0.89[AMR][1000 genomes]
rs16827971	0.89[AMR][1000 genomes]
rs16828010	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16828014	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16828324	0.89[AMR][1000 genomes]
rs2047548	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2201964	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3914481	0.89[AMR][1000 genomes]
rs57771301	0.89[AMR][1000 genomes]
rs57938898	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58033165	0.93[AMR][1000 genomes]
rs58893334	1.00[AMR][1000 genomes]
rs60716309	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73160634	0.89[AMR][1000 genomes]
rs73160639	0.89[AMR][1000 genomes]
rs73160643	0.89[AMR][1000 genomes]
rs73160646	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73160650	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73160652	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73162130	0.89[AMR][1000 genomes]
rs9853104	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157398200-157399000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:157398200-157399200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:157398400-157398800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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