Variant report
| Variant | rs73162114 |
|---|---|
| Chromosome Location | chr3:157490902-157490903 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12629565 | 1.00[AFR][1000 genomes] |
| rs12630293 | 1.00[AFR][1000 genomes] |
| rs12632880 | 1.00[AFR][1000 genomes] |
| rs1353890 | 1.00[AFR][1000 genomes] |
| rs1499787 | 1.00[AFR][1000 genomes] |
| rs16827940 | 1.00[AFR][1000 genomes] |
| rs16827950 | 1.00[AFR][1000 genomes] |
| rs16827960 | 1.00[AFR][1000 genomes] |
| rs16827971 | 1.00[AFR][1000 genomes] |
| rs16828010 | 1.00[AFR][1000 genomes] |
| rs16828014 | 1.00[AFR][1000 genomes] |
| rs16828324 | 1.00[AFR][1000 genomes] |
| rs2047548 | 1.00[AFR][1000 genomes] |
| rs2201964 | 1.00[AFR][1000 genomes] |
| rs3914481 | 1.00[AFR][1000 genomes] |
| rs4508733 | 1.00[AFR][1000 genomes] |
| rs57938898 | 1.00[AFR][1000 genomes] |
| rs58033165 | 1.00[AFR][1000 genomes] |
| rs58893334 | 1.00[AFR][1000 genomes] |
| rs60716309 | 1.00[AFR][1000 genomes] |
| rs73160634 | 1.00[AFR][1000 genomes] |
| rs73160639 | 1.00[AFR][1000 genomes] |
| rs73160643 | 1.00[AFR][1000 genomes] |
| rs73160646 | 1.00[AFR][1000 genomes] |
| rs73160650 | 1.00[AFR][1000 genomes] |
| rs73160652 | 1.00[AFR][1000 genomes] |
| rs73160698 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592121 | chr3:157437068-157593470 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv997770 | chr3:157441619-157595315 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:157490600-157491600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
