Variant report

Variant	rs13086148
Chromosome Location	chr3:98640542-98640543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98619561..98621947-chr3:98640525..98642623,2	MCF-7	breast:
2	chr1:50491131..50491896-chr3:98640391..98641232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000057019	Chromatin interaction
ENSG00000239462	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13059624	0.88[CEU][hapmap]
rs13091956	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34269725	0.88[CEU][hapmap]
rs34394867	0.83[EUR][1000 genomes]
rs34951301	0.87[AMR][1000 genomes]
rs35234681	0.81[EUR][1000 genomes]
rs35592768	0.83[EUR][1000 genomes]
rs35854439	0.94[EUR][1000 genomes]
rs36160001	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56408882	0.83[EUR][1000 genomes]
rs6764579	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98626600-98641600	Weak transcription	NHLF	lung
2	chr3:98635600-98641600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:98636400-98641400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:98636400-98643600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:98636600-98640800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:98638000-98640600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:98638800-98640600	Weak transcription	NHDF-Ad	bronchial
8	chr3:98639200-98642200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:98639400-98640800	Weak transcription	NH-A	brain
10	chr3:98639400-98641000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:98639400-98641000	Enhancers	Fetal Heart	heart
12	chr3:98639600-98640600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:98639600-98640600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:98639600-98640600	Weak transcription	Osteobl	bone
15	chr3:98639800-98641400	Weak transcription	HSMMtube	muscle
16	chr3:98640000-98640800	Genic enhancers	A549	lung
17	chr3:98640000-98642800	Enhancers	NHEK	skin
18	chr3:98640000-98643000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:98640200-98643000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:98640400-98643200	Enhancers	Hela-S3	cervix
21	chr3:98640400-98643600	Enhancers	HMEC	breast

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