Variant report
Variant | rs13091956 |
---|---|
Chromosome Location | chr3:98723010-98723011 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12107272 | 0.84[EUR][1000 genomes] |
rs12108018 | 0.82[EUR][1000 genomes] |
rs13065136 | 0.84[EUR][1000 genomes] |
rs13068317 | 0.82[EUR][1000 genomes] |
rs13074614 | 0.82[EUR][1000 genomes] |
rs13076960 | 0.82[EUR][1000 genomes] |
rs13081992 | 0.84[EUR][1000 genomes] |
rs13083238 | 0.82[EUR][1000 genomes] |
rs13083934 | 0.82[EUR][1000 genomes] |
rs13084692 | 0.82[EUR][1000 genomes] |
rs13086148 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13087631 | 0.82[EUR][1000 genomes] |
rs13096085 | 0.84[EUR][1000 genomes] |
rs13097876 | 0.84[EUR][1000 genomes] |
rs13100915 | 0.84[EUR][1000 genomes] |
rs13100937 | 0.84[EUR][1000 genomes] |
rs34008360 | 0.82[EUR][1000 genomes] |
rs34269725 | 0.84[EUR][1000 genomes] |
rs34279227 | 0.82[EUR][1000 genomes] |
rs34284740 | 0.84[EUR][1000 genomes] |
rs34394867 | 0.88[EUR][1000 genomes] |
rs34688367 | 0.82[EUR][1000 genomes] |
rs34711372 | 0.82[EUR][1000 genomes] |
rs34725039 | 0.84[EUR][1000 genomes] |
rs34826460 | 0.84[EUR][1000 genomes] |
rs34848749 | 0.82[EUR][1000 genomes] |
rs34951301 | 0.87[AMR][1000 genomes] |
rs35006699 | 0.82[EUR][1000 genomes] |
rs35025156 | 0.84[EUR][1000 genomes] |
rs35098355 | 0.82[EUR][1000 genomes] |
rs35103318 | 0.84[EUR][1000 genomes] |
rs35219252 | 0.82[EUR][1000 genomes] |
rs35234681 | 0.86[EUR][1000 genomes] |
rs35239055 | 0.82[EUR][1000 genomes] |
rs35312318 | 0.84[EUR][1000 genomes] |
rs35366262 | 0.82[EUR][1000 genomes] |
rs35422064 | 0.82[EUR][1000 genomes] |
rs35499232 | 0.84[EUR][1000 genomes] |
rs35514544 | 0.84[EUR][1000 genomes] |
rs35592768 | 0.88[EUR][1000 genomes] |
rs35764973 | 0.84[EUR][1000 genomes] |
rs35854439 | 0.95[EUR][1000 genomes] |
rs35914268 | 0.82[EUR][1000 genomes] |
rs35947806 | 0.82[EUR][1000 genomes] |
rs36098932 | 0.84[EUR][1000 genomes] |
rs36157152 | 0.84[EUR][1000 genomes] |
rs36160001 | 0.92[EUR][1000 genomes] |
rs55644421 | 0.82[EUR][1000 genomes] |
rs56083233 | 0.84[EUR][1000 genomes] |
rs56246599 | 0.84[EUR][1000 genomes] |
rs56408882 | 0.88[EUR][1000 genomes] |
rs6764579 | 0.86[EUR][1000 genomes] |
rs6805362 | 0.82[EUR][1000 genomes] |
rs71311398 | 0.82[EUR][1000 genomes] |
rs71311402 | 0.82[EUR][1000 genomes] |
rs71313508 | 0.84[EUR][1000 genomes] |
rs71313509 | 0.84[EUR][1000 genomes] |
rs71313510 | 0.84[EUR][1000 genomes] |
rs71313511 | 0.84[EUR][1000 genomes] |
rs7614053 | 0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591065 | chr3:98204198-98766326 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1007140 | chr3:98421229-99202458 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv536663 | chr3:98421229-99202458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv877214 | chr3:98445324-98738006 | Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1007486 | chr3:98597738-99249081 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv980100 | chr3:98714787-98766962 | Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:98717200-98730600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr3:98717600-98729200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr3:98721600-98724200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
4 | chr3:98721800-98726200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
5 | chr3:98722600-98723200 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
6 | chr3:98723000-98723600 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |