Variant report

Variant	rs13086711
Chromosome Location	chr3:141871441-141871442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:141871400-141871550	HVMF	connective:	n/a	n/a
2	CTCF	chr3:141871287-141871503	HepG2	liver:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
3	CTCF	chr3:141871385-141871447	Fibrobl	skin:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
4	MAX	chr3:141871412-141871494	HepG2	liver:	n/a	n/a
5	CTCF	chr3:141871289-141871577	A549	lung:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
6	CTCF	chr3:141871340-141871490	HBMEC	blood vessel:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
7	MAX	chr3:141871295-141871541	H1-hESC	embryonic stem cell:	n/a	chr3:141871383-141871390 chr3:141871382-141871391
8	CTCF	chr3:141871245-141871480	H1-hESC	embryonic stem cell:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
9	RAD21	chr3:141871135-141871640	H1-hESC	embryonic stem cell:	n/a	chr3:141871388-141871407 chr3:141871392-141871406
10	CTCF	chr3:141871317-141871484	Gliobla	brain:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
11	CTCF	chr3:141871320-141871470	Caco-2	colon:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
12	RAD21	chr3:141871268-141871560	HepG2	liver:	n/a	chr3:141871388-141871407 chr3:141871392-141871406
13	CTCF	chr3:141871320-141871470	GM12868	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
14	CTCF	chr3:141871361-141871442	IMR90	lung:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
15	CTCF	chr3:141871224-141871589	A549	lung:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
16	RAD21	chr3:141871198-141871616	HepG2	liver:	n/a	chr3:141871388-141871407 chr3:141871392-141871406
17	CTCF	chr3:141871320-141871470	GM12869	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
18	CTCF	chr3:141871320-141871470	HRE	kidney:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
19	CTCF	chr3:141871340-141871490	GM12865	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
20	CTCF	chr3:141871335-141871479	HUVEC	blood vessel:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
21	CTCF	chr3:141871340-141871490	HPF	lung:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
22	CTCF	chr3:141871300-141871450	MCF-7	breast:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
23	CTCF	chr3:141871203-141871497	HepG2	liver:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
24	CTCF	chr3:141871360-141871510	HRE	kidney:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
25	CTCF	chr3:141871316-141871510	A549	lung:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
26	CTCF	chr3:141871300-141871450	HCPEpiC	choroid plexus:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
27	CTCF	chr3:141871320-141871470	BE2_C	brain:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
28	MAX	chr3:141871240-141871510	K562	blood:	n/a	chr3:141871383-141871390 chr3:141871382-141871391
29	CTCF	chr3:141871319-141871505	K562	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
30	CTCF	chr3:141871340-141871490	GM12869	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
31	CTCF	chr3:141871400-141871550	GM06990	blood:	n/a	n/a
32	CTCF	chr3:141871327-141871469	GM19240	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
33	MAX	chr3:141871187-141871605	H1-hESC	embryonic stem cell:	n/a	chr3:141871383-141871390 chr3:141871382-141871391
34	CTCF	chr3:141871300-141871450	GM12873	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
35	CTCF	chr3:141871300-141871450	NB4	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
36	CTCF	chr3:141871314-141871481	GM12878	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
37	CTCF	chr3:141871340-141871490	HAc	cerebellar:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
38	CTCF	chr3:141871340-141871490	HCPEpiC	choroid plexus:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
39	CTCF	chr3:141871294-141871530	MCF-7	breast:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
40	RAD21	chr3:141871263-141871525	HepG2	liver:	n/a	chr3:141871388-141871407 chr3:141871392-141871406
41	MAZ	chr3:141871436-141871598	HepG2	liver:	n/a	n/a
42	RAD21	chr3:141871164-141871534	H1-hESC	embryonic stem cell:	n/a	chr3:141871388-141871407 chr3:141871392-141871406
43	CTCF	chr3:141871315-141871498	GM19239	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
44	CTCF	chr3:141871320-141871470	GM12866	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
45	CTCF	chr3:141871300-141871450	HEEpiC	esophagus:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
46	CTCF	chr3:141871357-141871447	GM10266	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
47	CTCF	chr3:141871280-141871539	MCF-7	breast:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
48	CTCF	chr3:141871320-141871470	AG04449	skin:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
49	CTCF	chr3:141871384-141871464	GM13977	blood:	n/a	chr3:141871392-141871405 chr3:141871392-141871405
50	SMC3	chr3:141871257-141871557	HepG2	liver:	n/a	chr3:141871392-141871406

No.	Distal block	Cell Line	Cell type
1	chr3:141869138..141873341-chr3:141874948..141878227,4	MCF-7	breast:
2	chr3:141681155..141682217-chr3:141870930..141871455,3	MCF-7	breast:
3	chr3:141866951..141869794-chr3:141871330..141873613,3	MCF-7	breast:
4	chr3:141862592..141866605-chr3:141869452..141871962,3	MCF-7	breast:
5	chr3:141863639..141867822-chr3:141868615..141873401,6	K562	blood:
6	chr3:141866172..141869567-chr3:141870149..141874954,7	MCF-7	breast:

Variant related genes	Relation type
TFDP2	TF binding region
ENSG00000206604	Chromatin interaction
ENSG00000114126	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62284561	1.00[AFR][1000 genomes]
rs62284562	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2757013	chr3:141756541-142094631	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1002123	chr3:141789746-141956778	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv536733	chr3:141789746-141956778	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1004784	chr3:141789746-142070290	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv460872	chr3:141812759-141984638	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv591911	chr3:141812759-141984638	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv591912	chr3:141812759-142071932	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	nsv522549	chr3:141812759-142164735	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv999975	chr3:141818850-142086659	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
14	nsv520523	chr3:141818850-142110818	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
15	nsv1008873	chr3:141820933-141994542	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	nsv999250	chr3:141820933-142077131	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
17	nsv1008179	chr3:141820933-142078977	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
18	nsv998076	chr3:141820933-142086659	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
19	nsv1009715	chr3:141820933-142091461	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
20	esv2763767	chr3:141820945-142101554	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
21	nsv1005216	chr3:141821448-142086659	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
22	nsv1001411	chr3:141822389-142084056	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
23	nsv536734	chr3:141822389-142084056	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
24	nsv997929	chr3:141822390-142084057	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
25	nsv536735	chr3:141822390-142084057	Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
26	nsv1006922	chr3:141822589-142078726	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
27	nsv536736	chr3:141822589-142078726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
28	nsv997293	chr3:141822589-142083917	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
29	nsv536737	chr3:141822589-142083917	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
30	nsv460874	chr3:141822621-141984638	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
31	nsv591913	chr3:141822621-141984638	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
32	nsv460875	chr3:141822621-142071932	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
33	nsv460876	chr3:141822621-142071932	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
34	nsv591914	chr3:141822621-142071932	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
35	nsv1001553	chr3:141824647-142063279	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
36	nsv1007508	chr3:141824647-142078977	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
37	nsv1000703	chr3:141824647-142086659	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
38	nsv1011883	chr3:141824744-142070290	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
39	nsv536738	chr3:141824744-142070290	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
40	nsv1003615	chr3:141829926-142086659	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
41	nsv1010416	chr3:141831727-142084056	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
42	nsv536739	chr3:141831727-142084056	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
43	nsv1001521	chr3:141831728-142078866	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
44	nsv536740	chr3:141831728-142078866	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
45	nsv1005623	chr3:141831728-142084057	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
46	nsv536741	chr3:141831728-142084057	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
47	nsv1008964	chr3:141831927-142078726	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
48	nsv536742	chr3:141831927-142078726	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
49	nsv1011946	chr3:141831927-142083917	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
50	nsv536743	chr3:141831927-142083917	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141868600-141872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:141868800-141872800	Weak transcription	HMEC	breast
3	chr3:141868800-141880000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:141868800-141880200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:141868800-141880400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:141868800-141886400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:141868800-141887600	Weak transcription	Primary B cells from cord blood	blood
8	chr3:141868800-141887600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:141868800-141887600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:141868800-141887600	Weak transcription	Gastric	stomach
11	chr3:141868800-141887600	Weak transcription	Left Ventricle	heart
12	chr3:141868800-141887600	Weak transcription	Ovary	ovary
13	chr3:141868800-141888800	Weak transcription	Spleen	Spleen
14	chr3:141868800-141897200	Weak transcription	Hela-S3	cervix
15	chr3:141868800-141898800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:141868800-141902600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:141868800-141943000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:141869000-141872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:141869000-141873000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:141869000-141877000	Weak transcription	Fetal Intestine Large	intestine
21	chr3:141869000-141879000	Weak transcription	Fetal Intestine Small	intestine
22	chr3:141869000-141879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:141869000-141879600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:141869000-141879800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:141869000-141879800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:141869000-141880000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:141869000-141880000	Weak transcription	Adipose Nuclei	Adipose
28	chr3:141869000-141880200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:141869000-141880400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:141869000-141880400	Weak transcription	Dnd41	blood
31	chr3:141869000-141880600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:141869000-141882200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:141869000-141882600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:141869000-141883200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:141869000-141883200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:141869000-141883200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:141869000-141887000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:141869000-141887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr3:141869000-141887600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:141869000-141887600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:141869000-141887600	Weak transcription	Esophagus	oesophagus
42	chr3:141869000-141887600	Weak transcription	Pancreas	Pancrea
43	chr3:141869000-141887800	Weak transcription	Brain Substantia Nigra	brain
44	chr3:141869000-141887800	Weak transcription	Thymus	Thymus
45	chr3:141869000-141888000	Weak transcription	Fetal Brain Female	brain
46	chr3:141869000-141888600	Weak transcription	Lung	lung
47	chr3:141869000-141888800	Weak transcription	Fetal Brain Male	brain
48	chr3:141869000-141893600	Weak transcription	Brain Germinal Matrix	brain
49	chr3:141869000-141899000	Weak transcription	Right Ventricle	heart
50	chr3:141869000-141922200	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links