Variant report

Variant	rs13088006
Chromosome Location	chr3:133295185-133295186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
2	chr3:133293596..133295529-chr3:133326380..133328140,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249993	Chromatin interaction
ENSG00000163781	Chromatin interaction

rs_ID	r²[population]
rs10049438	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1073196	0.90[ASN][1000 genomes]
rs12491777	0.80[ASN][1000 genomes]
rs4854586	0.89[ASN][1000 genomes]
rs4854587	0.89[ASN][1000 genomes]
rs4854735	0.87[ASN][1000 genomes]
rs58195246	0.89[ASN][1000 genomes]
rs59804735	0.89[ASN][1000 genomes]
rs60251264	0.89[ASN][1000 genomes]
rs6781238	0.80[ASN][1000 genomes]
rs72970169	0.89[ASN][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133291800-133295400	Active TSS	Aorta	Aorta
2	chr3:133292400-133295200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:133293200-133295600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:133293200-133296000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
5	chr3:133293400-133295400	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr3:133293400-133295600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
7	chr3:133293400-133295600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
8	chr3:133293600-133295200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
9	chr3:133293600-133295400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
10	chr3:133293600-133295400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
11	chr3:133293600-133295600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:133293600-133295600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
13	chr3:133293600-133295600	Transcr. at gene 5' and 3'	NHEK	skin
14	chr3:133293600-133297600	Transcr. at gene 5' and 3'	HSMM	muscle
15	chr3:133293600-133298400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
16	chr3:133293800-133295200	Transcr. at gene 5' and 3'	A549	lung
17	chr3:133293800-133295400	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:133293800-133295400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:133293800-133295400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
20	chr3:133293800-133295400	Transcr. at gene 5' and 3'	HSMMtube	muscle
21	chr3:133293800-133295400	Transcr. at gene 5' and 3'	K562	blood
22	chr3:133293800-133295600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
23	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
24	chr3:133293800-133295600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
27	chr3:133293800-133295600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
28	chr3:133293800-133295600	Transcr. at gene 5' and 3'	HMEC	breast
29	chr3:133293800-133296200	Transcr. at gene 5' and 3'	Thymus	Thymus
30	chr3:133293800-133296800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:133294000-133295200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr3:133294000-133295400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:133294000-133295400	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
34	chr3:133294000-133295400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
35	chr3:133294000-133295400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
36	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
37	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
38	chr3:133294000-133295400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:133294000-133295400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:133294000-133295400	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
42	chr3:133294000-133295600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:133294000-133295600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:133294000-133295600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:133294000-133295600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
46	chr3:133294000-133295600	Transcr. at gene 5' and 3'	Osteobl	bone
47	chr3:133294000-133296000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:133294200-133295200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
49	chr3:133294200-133295200	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
50	chr3:133294200-133295400	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links