Variant report

Variant	rs72970169
Chromosome Location	chr3:133300131-133300132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133212028..133213976-chr3:133298869..133300952,2	K562	blood:
2	chr3:133300041..133302235-chr3:133472033..133474036,2	K562	blood:
3	chr3:133289784..133294200-chr3:133298869..133303316,5	MCF-7	breast:
4	chr3:133300058..133302807-chr3:133305783..133309305,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10049438	0.89[ASN][1000 genomes]
rs1073196	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13088006	0.89[ASN][1000 genomes]
rs3772679	0.80[AMR][1000 genomes]
rs4854586	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4854587	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4854735	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58195246	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59326091	0.84[ASN][1000 genomes]
rs59804735	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60251264	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133294200-133301000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:133294200-133302200	Weak transcription	Pancreas	Pancrea
3	chr3:133294200-133306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133294400-133300200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:133294600-133308800	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr3:133294800-133309800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr3:133295200-133308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:133295400-133300400	Weak transcription	Colonic Mucosa	Colon
9	chr3:133295400-133301000	Weak transcription	Ovary	ovary
10	chr3:133295400-133301200	Weak transcription	Spleen	Spleen
11	chr3:133295400-133301400	Genic enhancers	Primary T cells fromperipheralblood	blood
12	chr3:133295400-133302400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:133295400-133308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:133295400-133308800	Strong transcription	Fetal Intestine Large	intestine
15	chr3:133295400-133309200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:133295400-133309200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:133295600-133301600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:133295600-133308800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:133295600-133309200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:133295600-133309200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:133295600-133309400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:133295600-133310400	Strong transcription	Fetal Stomach	stomach
23	chr3:133297400-133301600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr3:133297600-133301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:133297600-133302000	Weak transcription	Right Ventricle	heart
26	chr3:133297600-133302200	Weak transcription	Brain Anterior Caudate	brain
27	chr3:133297600-133302400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:133297600-133308400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr3:133297600-133308600	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:133297600-133308800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:133297600-133309400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:133297600-133309400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:133297600-133310200	Weak transcription	Right Atrium	heart
34	chr3:133297800-133304000	Weak transcription	Stomach Mucosa	stomach
35	chr3:133298000-133300400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:133298000-133301200	Weak transcription	A549	lung
37	chr3:133298000-133301200	Strong transcription	HSMM	muscle
38	chr3:133298000-133301400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:133298000-133302600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:133298000-133302800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:133298000-133302800	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:133298000-133304800	Weak transcription	Fetal Brain Male	brain
43	chr3:133298000-133305800	Strong transcription	Fetal Intestine Small	intestine
44	chr3:133298000-133308800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:133298000-133309000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:133298000-133309000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr3:133298200-133300200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:133298200-133300400	Weak transcription	Fetal Brain Female	brain
49	chr3:133298200-133300600	Weak transcription	HepG2	liver
50	chr3:133298200-133301000	Weak transcription	Psoas Muscle	Psoas

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