Variant report

Variant	rs59326091
Chromosome Location	chr3:133289707-133289708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr3:133289698-133290278	ECC-1	luminal epithelium:	n/a	n/a
2	EP300	chr3:133288560-133290355	ECC-1	luminal epithelium:	n/a	chr3:133289749-133289763 chr3:133289441-133289451 chr3:133289302-133289316 chr3:133289046-133289060 chr3:133289976-133289983 chr3:133289753-133289767 chr3:133289751-133289765

No.	Distal block	Cell Line	Cell type
1	chr3:133285334..133290041-chr3:133290312..133295358,10	MCF-7	breast:
2	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
3	chr3:133180154..133181710-chr3:133287523..133290190,2	MCF-7	breast:

Variant related genes	Relation type
CDV3	TF binding region
ENSG00000091527	Chromatin interaction
ENSG00000249993	Chromatin interaction

rs_ID	r²[population]
rs1073196	0.85[ASN][1000 genomes]
rs10935069	0.82[ASN][1000 genomes]
rs2084003	0.82[ASN][1000 genomes]
rs4425254	0.82[ASN][1000 genomes]
rs4854586	0.84[ASN][1000 genomes]
rs4854587	0.83[ASN][1000 genomes]
rs4854735	0.81[ASN][1000 genomes]
rs56320905	0.82[ASN][1000 genomes]
rs56381780	0.82[ASN][1000 genomes]
rs56400108	0.82[ASN][1000 genomes]
rs58195246	0.86[ASN][1000 genomes]
rs58407398	0.82[ASN][1000 genomes]
rs58926483	0.82[ASN][1000 genomes]
rs59804735	0.83[ASN][1000 genomes]
rs60251264	0.83[ASN][1000 genomes]
rs62280433	0.82[ASN][1000 genomes]
rs62280438	0.82[ASN][1000 genomes]
rs62280439	0.82[ASN][1000 genomes]
rs62282383	0.85[ASN][1000 genomes]
rs66549971	0.82[ASN][1000 genomes]
rs6789395	0.80[ASN][1000 genomes]
rs72970169	0.84[ASN][1000 genomes]
rs7429348	0.82[ASN][1000 genomes]
rs7633418	0.80[ASN][1000 genomes]
rs8180106	0.82[ASN][1000 genomes]

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:133286600-133290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:133286600-133290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:133286600-133291800	Enhancers	HMEC	breast
6	chr3:133286800-133290200	Enhancers	NHDF-Ad	bronchial
7	chr3:133286800-133290200	Enhancers	NHEK	skin
8	chr3:133286800-133291600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:133287000-133289800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:133287000-133290000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:133287000-133290200	Enhancers	Placenta	Placenta
12	chr3:133287000-133290200	Enhancers	NHLF	lung
13	chr3:133287000-133291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:133287000-133291800	Enhancers	HSMMtube	muscle
15	chr3:133287200-133290000	Enhancers	Stomach Mucosa	stomach
16	chr3:133287200-133290200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:133287400-133290000	Enhancers	Aorta	Aorta
18	chr3:133287400-133290000	Enhancers	HepG2	liver
19	chr3:133287400-133290800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:133287400-133291000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr3:133287400-133291200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:133287400-133291600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:133287600-133290200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:133287600-133290800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:133287800-133290800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:133287800-133290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:133287800-133291200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:133287800-133291400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:133287800-133291600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:133288000-133290000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:133288000-133291000	Weak transcription	Spleen	Spleen
34	chr3:133288000-133291400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:133288000-133291600	Enhancers	Osteobl	bone
36	chr3:133288000-133292400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:133288200-133290000	Enhancers	Left Ventricle	heart
38	chr3:133288200-133290000	Enhancers	Hela-S3	cervix
39	chr3:133288200-133290400	Enhancers	HSMM	muscle
40	chr3:133288200-133290800	Enhancers	GM12878-XiMat	blood
41	chr3:133288400-133290200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr3:133288600-133291000	Enhancers	Primary B cells from cord blood	blood
43	chr3:133288800-133290200	Enhancers	Thymus	Thymus
44	chr3:133289000-133289800	Enhancers	Fetal Muscle Leg	muscle
45	chr3:133289000-133290200	Enhancers	Fetal Thymus	thymus
46	chr3:133289000-133291400	Weak transcription	Adipose Nuclei	Adipose
47	chr3:133289200-133289800	Enhancers	Small Intestine	intestine
48	chr3:133289200-133291200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:133289200-133291400	Weak transcription	Fetal Lung	lung
50	chr3:133289200-133291600	Enhancers	HUVEC	blood vessel

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