Variant report

Variant	rs8180106
Chromosome Location	chr3:133286737-133286738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133285334..133290041-chr3:133290312..133295358,10	MCF-7	breast:
2	chr3:133279685..133281617-chr3:133285489..133287947,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10935069	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637437	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840521	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840524	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2084003	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425254	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854732	0.85[AFR][1000 genomes]
rs56320905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56400108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58407398	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58926483	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59326091	0.82[ASN][1000 genomes]
rs62280428	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62280433	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280438	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280439	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282383	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439423	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66488561	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66549971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789395	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802296	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7429348	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633418	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133281400-133287400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:133282600-133286800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:133282600-133286800	Weak transcription	Osteobl	bone
5	chr3:133282800-133287000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:133283000-133286800	Weak transcription	NH-A	brain
7	chr3:133283200-133286800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:133283200-133286800	Weak transcription	NHDF-Ad	bronchial
9	chr3:133283200-133287000	Weak transcription	NHLF	lung
10	chr3:133283400-133286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:133283400-133287000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:133283600-133286800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:133283600-133287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:133283800-133286800	Weak transcription	HSMM	muscle
15	chr3:133284000-133287000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:133284000-133287000	Weak transcription	HSMMtube	muscle
17	chr3:133284200-133286800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:133284200-133286800	Weak transcription	A549	lung
19	chr3:133284200-133287000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:133284200-133287800	Weak transcription	Spleen	Spleen
21	chr3:133285000-133289200	Weak transcription	Lung	lung
22	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:133285200-133287400	Enhancers	GM12878-XiMat	blood
24	chr3:133285200-133288200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr3:133285200-133289600	Enhancers	Primary B cells from peripheral blood	blood
26	chr3:133285400-133286800	Weak transcription	HepG2	liver
27	chr3:133285600-133286800	Weak transcription	Hela-S3	cervix
28	chr3:133285600-133287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:133286000-133287000	Enhancers	Primary B cells from cord blood	blood
30	chr3:133286600-133287000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:133286600-133287000	Weak transcription	Placenta	Placenta
32	chr3:133286600-133290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:133286600-133290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:133286600-133291800	Enhancers	HMEC	breast

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