Variant report

Variant	rs6802296
Chromosome Location	chr3:133267202-133267203
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:133267146-133267267	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133267011..133268726-chr3:133286807..133288849,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272832	TF binding region
ENSG00000250983	TF binding region
ENSG00000201827	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10049438	0.84[CHB][hapmap]
rs10935069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084003	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4425254	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56320905	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56381780	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56400108	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58407398	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58926483	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280428	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62280433	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280438	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62280439	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62282383	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439423	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66488561	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66549971	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789395	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7429348	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7633418	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180106	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872134	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395931	chr3:133267163-133267310	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133260200-133268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:133263400-133267400	Enhancers	Liver	Liver
3	chr3:133264600-133267800	Enhancers	Placenta	Placenta
4	chr3:133265400-133267400	Enhancers	Fetal Heart	heart
5	chr3:133265600-133267400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:133265600-133267400	Enhancers	A549	lung
7	chr3:133265600-133267400	Enhancers	NHLF	lung
8	chr3:133265600-133267600	Enhancers	NHDF-Ad	bronchial
9	chr3:133265600-133267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:133265600-133268000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:133265800-133267400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:133265800-133267400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:133265800-133267400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:133265800-133267400	Enhancers	Stomach Mucosa	stomach
15	chr3:133265800-133267600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:133265800-133267600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:133266000-133267400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:133266000-133267400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr3:133266200-133267400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:133266400-133267400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:133266400-133267600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr3:133266600-133267400	Enhancers	GM12878-XiMat	blood
23	chr3:133266600-133267800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:133266600-133269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:133266600-133269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:133266800-133267600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:133266800-133270600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:133266800-133271000	Enhancers	HepG2	liver
29	chr3:133267000-133268000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:133267000-133268000	Enhancers	HSMMtube	muscle
31	chr3:133267000-133268200	Weak transcription	Ovary	ovary
32	chr3:133267000-133270000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:133267000-133270200	Weak transcription	Thymus	Thymus
34	chr3:133267200-133267800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:133267200-133267800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr3:133267200-133267800	Enhancers	Osteobl	bone
37	chr3:133267200-133268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:133267200-133268200	Enhancers	HSMM	muscle
39	chr3:133267200-133270000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:133267200-133270200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:133267200-133270800	Weak transcription	Pancreas	Pancrea

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