Variant report

Variant	rs872134
Chromosome Location	chr3:133265532-133265533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10433415	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10935068	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13091585	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382701	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1444600	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs16840521	0.89[AFR][1000 genomes]
rs1842155	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1867506	0.86[ASN][1000 genomes]
rs2002016	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35318210	0.96[ASN][1000 genomes]
rs3860498	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4017074	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4527377	0.96[ASN][1000 genomes]
rs4854723	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4854724	0.96[ASN][1000 genomes]
rs4854727	0.93[CHD][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854729	0.86[ASN][1000 genomes]
rs4854732	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4854733	0.82[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58407398	0.88[AFR][1000 genomes]
rs66488561	0.85[AFR][1000 genomes]
rs6763627	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773777	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773891	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778062	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6785365	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789395	0.85[AFR][1000 genomes]
rs6802296	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6809513	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7614812	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133257000-133265600	Weak transcription	Ovary	ovary
2	chr3:133260200-133268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:133260400-133265600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:133260400-133265600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:133260400-133265600	Weak transcription	Adipose Nuclei	Adipose
6	chr3:133260400-133265600	Weak transcription	A549	lung
7	chr3:133260400-133265600	Weak transcription	HSMMtube	muscle
8	chr3:133260400-133265800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:133260400-133265800	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:133260400-133265800	Weak transcription	Lung	lung
11	chr3:133260400-133266200	Weak transcription	Esophagus	oesophagus
12	chr3:133260600-133265600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:133260600-133265600	Weak transcription	NHLF	lung
14	chr3:133260600-133265600	Weak transcription	Osteobl	bone
15	chr3:133260600-133265800	Weak transcription	Stomach Mucosa	stomach
16	chr3:133260600-133265800	Weak transcription	NH-A	brain
17	chr3:133260600-133266000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:133260600-133266000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:133260600-133266000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:133260600-133266000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:133260600-133266000	Weak transcription	HMEC	breast
22	chr3:133260800-133265600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:133261800-133265800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:133262200-133265600	Weak transcription	NHDF-Ad	bronchial
25	chr3:133262200-133266000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:133262600-133266000	Weak transcription	Fetal Lung	lung
27	chr3:133263400-133267400	Enhancers	Liver	Liver
28	chr3:133264000-133267200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:133264600-133266600	Weak transcription	GM12878-XiMat	blood
30	chr3:133264600-133267800	Enhancers	Placenta	Placenta
31	chr3:133265000-133265800	Weak transcription	HepG2	liver
32	chr3:133265000-133266000	Weak transcription	Pancreas	Pancrea
33	chr3:133265400-133265600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:133265400-133266200	Enhancers	HSMM	muscle
35	chr3:133265400-133267000	Enhancers	Fetal Muscle Trunk	muscle
36	chr3:133265400-133267200	Enhancers	Stomach Smooth Muscle	stomach
37	chr3:133265400-133267400	Enhancers	Fetal Heart	heart

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