Variant report

Variant	rs1842155
Chromosome Location	chr3:133288681-133288682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr3:133288608-133289595	ECC-1	luminal epithelium:	n/a	n/a
2	TEAD4	chr3:133288661-133289608	ECC-1	luminal epithelium:	n/a	n/a
3	EP300	chr3:133288560-133290355	ECC-1	luminal epithelium:	n/a	chr3:133289749-133289763 chr3:133289441-133289451 chr3:133289302-133289316 chr3:133289046-133289060 chr3:133289976-133289983 chr3:133289753-133289767 chr3:133289751-133289765

No.	Distal block	Cell Line	Cell type
1	chr3:133285334..133290041-chr3:133290312..133295358,10	MCF-7	breast:
2	chr3:133287190..133289166-chr3:133290175..133292220,2	K562	blood:
3	chr3:133286764..133288801-chr3:133292241..133294020,2	K562	blood:
4	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
5	chr3:133180154..133181710-chr3:133287523..133290190,2	MCF-7	breast:
6	chr3:133267011..133268726-chr3:133286807..133288849,2	MCF-7	breast:
7	chr3:133283859..133285638-chr3:133287475..133289524,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDV3-1	chr3:133288236-133288814	NONHSAT092191

Variant related genes	Relation type
CDV3	TF binding region
ENSG00000091527	Chromatin interaction
ENSG00000249993	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10433415	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935068	0.95[ASN][1000 genomes]
rs13091585	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1382701	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444600	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867506	0.83[ASN][1000 genomes]
rs2002016	0.95[ASN][1000 genomes]
rs35318210	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4017074	0.94[ASN][1000 genomes]
rs4527377	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854723	0.91[ASN][1000 genomes]
rs4854724	0.92[ASN][1000 genomes]
rs4854727	0.95[ASN][1000 genomes]
rs4854729	0.83[ASN][1000 genomes]
rs4854732	0.97[ASN][1000 genomes]
rs4854733	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763627	0.94[ASN][1000 genomes]
rs6773777	0.94[ASN][1000 genomes]
rs6773891	0.94[ASN][1000 genomes]
rs6778062	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785365	0.94[ASN][1000 genomes]
rs6809513	0.94[ASN][1000 genomes]
rs7614812	0.96[ASN][1000 genomes]
rs872134	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133285000-133289200	Weak transcription	Lung	lung
3	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:133285200-133289600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:133286600-133290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:133286600-133290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:133286600-133291800	Enhancers	HMEC	breast
8	chr3:133286800-133288800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:133286800-133288800	Enhancers	HUVEC	blood vessel
10	chr3:133286800-133289600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:133286800-133290200	Enhancers	NHDF-Ad	bronchial
12	chr3:133286800-133290200	Enhancers	NHEK	skin
13	chr3:133286800-133291600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:133287000-133289400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:133287000-133289800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr3:133287000-133290000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:133287000-133290200	Enhancers	Placenta	Placenta
18	chr3:133287000-133290200	Enhancers	NHLF	lung
19	chr3:133287000-133291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:133287000-133291800	Enhancers	HSMMtube	muscle
21	chr3:133287200-133289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:133287200-133290000	Enhancers	Stomach Mucosa	stomach
23	chr3:133287200-133290200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:133287400-133289000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:133287400-133289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:133287400-133290000	Enhancers	Aorta	Aorta
27	chr3:133287400-133290000	Enhancers	HepG2	liver
28	chr3:133287400-133290800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr3:133287400-133291000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:133287400-133291200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:133287400-133291600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:133287600-133288800	Weak transcription	Thymus	Thymus
33	chr3:133287600-133290200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:133287600-133290800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:133287800-133290800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:133287800-133290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:133287800-133291200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:133287800-133291400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:133287800-133291600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:133288000-133289000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:133288000-133289400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:133288000-133290000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:133288000-133291000	Weak transcription	Spleen	Spleen
46	chr3:133288000-133291400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:133288000-133291600	Enhancers	Osteobl	bone
48	chr3:133288000-133292400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:133288200-133288800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr3:133288200-133289400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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