Variant report

Variant	rs35318210
Chromosome Location	chr3:133289048-133289049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr3:133288834-133289365	A549	lung:	n/a	n/a
2	GATA3	chr3:133288833-133289485	SK-N-SH	brain:	n/a	n/a
3	NR3C1	chr3:133288946-133289406	ECC-1	luminal epithelium:	n/a	chr3:133289263-133289270
4	TEAD4	chr3:133288973-133289499	SK-N-SH	brain:	n/a	n/a
5	NR3C1	chr3:133288944-133289300	A549	lung:	n/a	chr3:133289263-133289270
6	NR3C1	chr3:133288944-133289339	A549	lung:	n/a	chr3:133289263-133289270
7	NFIC	chr3:133288847-133289401	SK-N-SH	brain:	n/a	n/a
8	FOXA1	chr3:133288946-133289265	T-47D	breast:	n/a	n/a
9	TCF12	chr3:133288682-133289583	SK-N-SH	brain:	n/a	n/a
10	FOXM1	chr3:133288782-133289556	ECC-1	luminal epithelium:	n/a	n/a
11	TCF12	chr3:133288608-133289595	ECC-1	luminal epithelium:	n/a	n/a
12	MAX	chr3:133288926-133289439	SK-N-SH	brain:	n/a	n/a
13	YY1	chr3:133289022-133289422	ECC-1	luminal epithelium:	n/a	n/a
14	TCF12	chr3:133288769-133289596	SK-N-SH	brain:	n/a	n/a
15	JUND	chr3:133288766-133289479	SK-N-SH	brain:	n/a	chr3:133289130-133289137
16	REST	chr3:133289042-133289398	SK-N-SH	brain:	n/a	n/a
17	TEAD4	chr3:133288661-133289608	ECC-1	luminal epithelium:	n/a	n/a
18	STAT3	chr3:133288930-133289323	MCF10A-Er-Src	breast:	n/a	n/a
19	STAT3	chr3:133288834-133289304	MCF10A-Er-Src	breast:	n/a	n/a
20	MAFF	chr3:133288986-133289330	HepG2	liver:	n/a	n/a
21	FOSL2	chr3:133288931-133289342	SK-N-SH	brain:	n/a	chr3:133289130-133289137
22	POLR2A	chr3:133288709-133289498	HUVEC	blood vessel:	n/a	n/a
23	EP300	chr3:133288871-133289438	A549	lung:	n/a	chr3:133289302-133289316 chr3:133289046-133289060
24	FOSL2	chr3:133288927-133289314	A549	lung:	n/a	chr3:133289130-133289137
25	JUN	chr3:133288883-133289384	HUVEC	blood vessel:	n/a	chr3:133289130-133289137
26	POLR2A	chr3:133288788-133289273	HUVEC	blood vessel:	n/a	n/a
27	FOSL1	chr3:133288834-133289436	HCT-116	colon:	n/a	chr3:133289130-133289137
28	POLR2A	chr3:133288856-133289279	HUVEC	blood vessel:	n/a	n/a
29	MAFK	chr3:133288987-133289318	Hela-S3	cervix:	n/a	chr3:133289177-133289192
30	GATA3	chr3:133288762-133289519	SK-N-SH	brain:	n/a	n/a
31	FOS	chr3:133288940-133289406	MCF10A-Er-Src	breast:	n/a	chr3:133289130-133289137
32	TEAD4	chr3:133288796-133289561	ECC-1	luminal epithelium:	n/a	n/a
33	MAFK	chr3:133288984-133289398	IMR90	lung:	n/a	chr3:133289177-133289192
34	TEAD4	chr3:133288730-133289531	SK-N-SH	brain:	n/a	n/a
35	NFIC	chr3:133288759-133289587	ECC-1	luminal epithelium:	n/a	n/a
36	TAF1	chr3:133288959-133289227	SK-N-SH	brain:	n/a	n/a
37	MYC	chr3:133289000-133289377	MCF10A-Er-Src	breast:	n/a	n/a
38	GATA2	chr3:133288843-133289269	HUVEC	blood vessel:	n/a	n/a
39	JUND	chr3:133288850-133289646	SK-N-SH	brain:	n/a	chr3:133289130-133289137
40	SP1	chr3:133288896-133289383	A549	lung:	n/a	n/a
41	MAX	chr3:133288857-133289518	A549	lung:	n/a	n/a
42	EP300	chr3:133288718-133289549	SK-N-SH	brain:	n/a	chr3:133289441-133289451 chr3:133289302-133289316 chr3:133289046-133289060
43	STAT3	chr3:133288851-133289379	MCF10A-Er-Src	breast:	n/a	n/a
44	PBX3	chr3:133288935-133289445	SK-N-SH	brain:	n/a	n/a
45	TEAD4	chr3:133288835-133289349	HepG2	liver:	n/a	n/a
46	NFIC	chr3:133288842-133289612	SK-N-SH	brain:	n/a	n/a
47	JUND	chr3:133288964-133289251	A549	lung:	n/a	chr3:133289130-133289137
48	POLR2A	chr3:133288883-133289324	SK-N-SH	brain:	n/a	n/a
49	NR3C1	chr3:133288907-133289369	ECC-1	luminal epithelium:	n/a	chr3:133289263-133289270
50	SP1	chr3:133288853-133289387	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:133285334..133290041-chr3:133290312..133295358,10	MCF-7	breast:
2	chr3:133287190..133289166-chr3:133290175..133292220,2	K562	blood:
3	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
4	chr3:133180154..133181710-chr3:133287523..133290190,2	MCF-7	breast:
5	chr3:133283859..133285638-chr3:133287475..133289524,2	K562	blood:

Variant related genes	Relation type
CDV3	TF binding region
ENSG00000091527	Chromatin interaction
ENSG00000249993	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10433415	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935068	0.95[ASN][1000 genomes]
rs13091585	0.96[ASN][1000 genomes]
rs1382701	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444600	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842155	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867506	0.83[ASN][1000 genomes]
rs2002016	0.95[ASN][1000 genomes]
rs4017074	0.94[ASN][1000 genomes]
rs4527377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854723	0.91[ASN][1000 genomes]
rs4854724	0.92[ASN][1000 genomes]
rs4854727	0.95[ASN][1000 genomes]
rs4854729	0.83[ASN][1000 genomes]
rs4854732	0.97[ASN][1000 genomes]
rs4854733	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763627	0.94[ASN][1000 genomes]
rs6773777	0.94[ASN][1000 genomes]
rs6773891	0.94[ASN][1000 genomes]
rs6778062	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785365	0.94[ASN][1000 genomes]
rs6809513	0.94[ASN][1000 genomes]
rs7614812	0.96[ASN][1000 genomes]
rs872134	0.96[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133285000-133289200	Weak transcription	Lung	lung
3	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:133285200-133289600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:133286600-133290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:133286600-133290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:133286600-133291800	Enhancers	HMEC	breast
8	chr3:133286800-133289600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:133286800-133290200	Enhancers	NHDF-Ad	bronchial
10	chr3:133286800-133290200	Enhancers	NHEK	skin
11	chr3:133286800-133291600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:133287000-133289400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:133287000-133289800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:133287000-133290000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:133287000-133290200	Enhancers	Placenta	Placenta
16	chr3:133287000-133290200	Enhancers	NHLF	lung
17	chr3:133287000-133291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:133287000-133291800	Enhancers	HSMMtube	muscle
19	chr3:133287200-133290000	Enhancers	Stomach Mucosa	stomach
20	chr3:133287200-133290200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:133287400-133289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:133287400-133290000	Enhancers	Aorta	Aorta
23	chr3:133287400-133290000	Enhancers	HepG2	liver
24	chr3:133287400-133290800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr3:133287400-133291000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:133287400-133291200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:133287400-133291600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:133287600-133290200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:133287600-133290800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:133287600-133291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:133287800-133290800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:133287800-133290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:133287800-133291200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:133287800-133291400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:133287800-133291600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:133288000-133289400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:133288000-133290000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:133288000-133291000	Weak transcription	Spleen	Spleen
40	chr3:133288000-133291400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:133288000-133291600	Enhancers	Osteobl	bone
42	chr3:133288000-133292400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:133288200-133289400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr3:133288200-133289600	Enhancers	Psoas Muscle	Psoas
45	chr3:133288200-133290000	Enhancers	Left Ventricle	heart
46	chr3:133288200-133290000	Enhancers	Hela-S3	cervix
47	chr3:133288200-133290400	Enhancers	HSMM	muscle
48	chr3:133288200-133290800	Enhancers	GM12878-XiMat	blood
49	chr3:133288400-133289200	Weak transcription	Esophagus	oesophagus
50	chr3:133288400-133289400	Enhancers	HUES64 Cell Line	embryonic stem cell

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