Variant report

Variant	rs4017074
Chromosome Location	chr3:133260427-133260428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133257830..133260535-chr3:133268010..133270968,2	MCF-7	breast:
2	chr3:133259493..133261028-chr3:133291270..133292901,2	MCF-7	breast:
3	chr3:133253920..133256793-chr3:133259764..133261760,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201827	Chromatin interaction
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10433415	1.00[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs10935068	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13091585	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1382701	0.94[ASN][1000 genomes]
rs1444600	1.00[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs1842155	0.94[ASN][1000 genomes]
rs1867506	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2002016	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35318210	0.94[ASN][1000 genomes]
rs3860498	0.85[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4527377	0.94[ASN][1000 genomes]
rs4533654	0.81[CEU][hapmap]
rs4854723	0.95[ASN][1000 genomes]
rs4854724	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4854727	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854729	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4854732	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4854733	0.89[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs6763627	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773777	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773891	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778062	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6785365	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809513	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614812	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872134	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133256000-133262000	Weak transcription	Fetal Lung	lung
2	chr3:133257000-133265600	Weak transcription	Ovary	ovary
3	chr3:133259000-133260600	Enhancers	GM12878-XiMat	blood
4	chr3:133259200-133260600	Enhancers	HUVEC	blood vessel
5	chr3:133259200-133260800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:133259200-133261800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:133259600-133260600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:133259600-133260600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:133259600-133260600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:133259600-133260600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:133259600-133260600	Enhancers	Stomach Mucosa	stomach
12	chr3:133259600-133260600	Enhancers	Spleen	Spleen
13	chr3:133259600-133260600	Enhancers	Hela-S3	cervix
14	chr3:133259600-133260600	Enhancers	HMEC	breast
15	chr3:133259600-133260600	Enhancers	HSMM	muscle
16	chr3:133259600-133260600	Enhancers	NHDF-Ad	bronchial
17	chr3:133259600-133260600	Enhancers	Osteobl	bone
18	chr3:133259800-133260600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr3:133259800-133260600	Enhancers	NH-A	brain
20	chr3:133260000-133260600	Enhancers	Small Intestine	intestine
21	chr3:133260200-133260600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:133260200-133260800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:133260200-133263400	Weak transcription	Liver	Liver
24	chr3:133260200-133263600	Weak transcription	Placenta	Placenta
25	chr3:133260200-133268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:133260400-133260600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:133260400-133260600	Active TSS	Duodenum Mucosa	Duodenum
28	chr3:133260400-133260600	Enhancers	NHLF	lung
29	chr3:133260400-133260800	Enhancers	HepG2	liver
30	chr3:133260400-133261600	Weak transcription	Pancreas	Pancrea
31	chr3:133260400-133265400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:133260400-133265600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:133260400-133265600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:133260400-133265600	Weak transcription	Adipose Nuclei	Adipose
35	chr3:133260400-133265600	Weak transcription	A549	lung
36	chr3:133260400-133265600	Weak transcription	HSMMtube	muscle
37	chr3:133260400-133265800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:133260400-133265800	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:133260400-133265800	Weak transcription	Lung	lung
40	chr3:133260400-133266200	Weak transcription	Esophagus	oesophagus

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