Variant report

Variant	rs1382701
Chromosome Location	chr3:133282583-133282584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133282060..133284169-chr3:133291408..133294454,3	MCF-7	breast:
2	chr3:133281222..133283937-chr3:133291070..133294749,3	K562	blood:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10433415	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935068	0.95[ASN][1000 genomes]
rs13091585	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1444600	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842155	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867506	0.83[ASN][1000 genomes]
rs2002016	0.95[ASN][1000 genomes]
rs35318210	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4017074	0.94[ASN][1000 genomes]
rs4527377	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854723	0.91[ASN][1000 genomes]
rs4854724	0.92[ASN][1000 genomes]
rs4854727	0.95[ASN][1000 genomes]
rs4854729	0.83[ASN][1000 genomes]
rs4854732	0.97[ASN][1000 genomes]
rs4854733	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763627	0.94[ASN][1000 genomes]
rs6773777	0.94[ASN][1000 genomes]
rs6773891	0.94[ASN][1000 genomes]
rs6778062	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785365	0.94[ASN][1000 genomes]
rs6809513	0.94[ASN][1000 genomes]
rs7614812	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs872134	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280200-133283200	Weak transcription	HepG2	liver
2	chr3:133280800-133283800	Enhancers	HSMM	muscle
3	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:133281400-133282600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133281400-133283200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:133281400-133287400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:133281600-133282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:133281600-133283200	Enhancers	NHDF-Ad	bronchial
9	chr3:133281600-133283400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:133281600-133285200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:133281600-133285200	Weak transcription	GM12878-XiMat	blood
12	chr3:133281800-133286400	Weak transcription	Placenta	Placenta
13	chr3:133282000-133282600	Enhancers	Osteobl	bone
14	chr3:133282000-133283200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:133282200-133283000	Enhancers	NH-A	brain
16	chr3:133282200-133283400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:133282200-133283600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:133282200-133284000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:133282400-133282600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:133282400-133283200	Enhancers	NHLF	lung
21	chr3:133282400-133284000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:133282400-133284000	Enhancers	HSMMtube	muscle

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