Variant report

Variant	rs6763627
Chromosome Location	chr3:133262567-133262568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133262444..133264303-chr3:133267432..133269001,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10433415	1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs10935068	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13091585	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1382701	0.94[ASN][1000 genomes]
rs1444600	1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs1842155	0.94[ASN][1000 genomes]
rs1867506	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2002016	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35318210	0.94[ASN][1000 genomes]
rs3860498	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4017074	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527377	0.94[ASN][1000 genomes]
rs4533654	0.81[CEU][hapmap]
rs4854723	0.95[ASN][1000 genomes]
rs4854724	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4854727	0.92[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854729	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4854732	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4854733	0.89[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs6773777	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773891	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778062	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6785365	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809513	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614812	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872134	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133257000-133265600	Weak transcription	Ovary	ovary
2	chr3:133260200-133263400	Weak transcription	Liver	Liver
3	chr3:133260200-133263600	Weak transcription	Placenta	Placenta
4	chr3:133260200-133268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:133260400-133265400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:133260400-133265600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:133260400-133265600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:133260400-133265600	Weak transcription	Adipose Nuclei	Adipose
9	chr3:133260400-133265600	Weak transcription	A549	lung
10	chr3:133260400-133265600	Weak transcription	HSMMtube	muscle
11	chr3:133260400-133265800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:133260400-133265800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:133260400-133265800	Weak transcription	Lung	lung
14	chr3:133260400-133266200	Weak transcription	Esophagus	oesophagus
15	chr3:133260600-133264000	Weak transcription	GM12878-XiMat	blood
16	chr3:133260600-133265400	Weak transcription	HSMM	muscle
17	chr3:133260600-133265600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:133260600-133265600	Weak transcription	NHLF	lung
19	chr3:133260600-133265600	Weak transcription	Osteobl	bone
20	chr3:133260600-133265800	Weak transcription	Stomach Mucosa	stomach
21	chr3:133260600-133265800	Weak transcription	NH-A	brain
22	chr3:133260600-133266000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:133260600-133266000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:133260600-133266000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:133260600-133266000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:133260600-133266000	Weak transcription	HMEC	breast
27	chr3:133260800-133265600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:133261800-133265800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:133262000-133262600	Enhancers	Fetal Lung	lung
30	chr3:133262000-133263400	Weak transcription	HepG2	liver
31	chr3:133262200-133265600	Weak transcription	NHDF-Ad	bronchial
32	chr3:133262200-133266000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links