Variant report

Variant	rs4854729
Chromosome Location	chr3:133259401-133259402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133257830..133260535-chr3:133268010..133270968,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201827	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10433415	0.83[ASN][1000 genomes]
rs10935068	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13091585	0.86[ASN][1000 genomes]
rs1382701	0.83[ASN][1000 genomes]
rs1444600	0.83[ASN][1000 genomes]
rs1842155	0.83[ASN][1000 genomes]
rs2002016	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35318210	0.83[ASN][1000 genomes]
rs4017074	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4527377	0.83[ASN][1000 genomes]
rs4854723	0.84[ASN][1000 genomes]
rs4854724	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4854727	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4854732	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4854733	0.81[ASN][1000 genomes]
rs6763627	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6773777	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6773891	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6778062	0.83[ASN][1000 genomes]
rs6785365	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6809513	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7614812	0.86[ASN][1000 genomes]
rs872134	0.86[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133255800-133259600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:133255800-133259600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:133255800-133259600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:133255800-133259600	Weak transcription	Esophagus	oesophagus
5	chr3:133255800-133259600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:133255800-133259600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:133255800-133259600	Weak transcription	Spleen	Spleen
8	chr3:133255800-133259800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:133255800-133259800	Weak transcription	NHEK	skin
10	chr3:133256000-133259600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:133256000-133259600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:133256000-133259600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:133256000-133259600	Weak transcription	Gastric	stomach
14	chr3:133256000-133259600	Weak transcription	HepG2	liver
15	chr3:133256000-133259600	Weak transcription	HSMM	muscle
16	chr3:133256000-133259600	Weak transcription	NHDF-Ad	bronchial
17	chr3:133256000-133259600	Weak transcription	Osteobl	bone
18	chr3:133256000-133259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:133256000-133259800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:133256000-133259800	Weak transcription	NH-A	brain
21	chr3:133256000-133262000	Weak transcription	Fetal Lung	lung
22	chr3:133256200-133259600	Weak transcription	Stomach Mucosa	stomach
23	chr3:133256200-133259600	Weak transcription	NHLF	lung
24	chr3:133257000-133265600	Weak transcription	Ovary	ovary
25	chr3:133257200-133259600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:133257400-133259600	Weak transcription	Hela-S3	cervix
27	chr3:133258200-133259600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:133259000-133259800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:133259000-133260600	Enhancers	GM12878-XiMat	blood
30	chr3:133259200-133260000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr3:133259200-133260400	Enhancers	Adipose Nuclei	Adipose
32	chr3:133259200-133260400	Enhancers	A549	lung
33	chr3:133259200-133260600	Enhancers	HUVEC	blood vessel
34	chr3:133259200-133260800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:133259200-133261800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:133259400-133259600	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:133259400-133260000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr3:133259400-133260000	Enhancers	Colonic Mucosa	Colon

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