Variant report

Variant	rs4854733
Chromosome Location	chr3:133287065-133287066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133285334..133290041-chr3:133290312..133295358,10	MCF-7	breast:
2	chr3:133286764..133288801-chr3:133292241..133294020,2	K562	blood:
3	chr3:133267011..133268726-chr3:133286807..133288849,2	MCF-7	breast:
4	chr3:133279685..133281617-chr3:133285489..133287947,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10433415	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935068	0.92[ASN][1000 genomes]
rs13091585	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1382701	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1444600	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1842155	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867506	0.81[ASN][1000 genomes]
rs2002016	0.92[ASN][1000 genomes]
rs35318210	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3860498	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4017074	0.89[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs4527377	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4854723	0.89[ASN][1000 genomes]
rs4854724	0.90[ASN][1000 genomes]
rs4854727	0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4854729	0.81[ASN][1000 genomes]
rs4854732	0.95[ASN][1000 genomes]
rs6763627	0.91[ASN][1000 genomes]
rs6773777	0.91[ASN][1000 genomes]
rs6773891	0.91[ASN][1000 genomes]
rs6778062	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785365	0.91[ASN][1000 genomes]
rs6809513	0.91[ASN][1000 genomes]
rs7614812	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs872134	0.82[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133281400-133287400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:133284200-133287800	Weak transcription	Spleen	Spleen
4	chr3:133285000-133289200	Weak transcription	Lung	lung
5	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:133285200-133287400	Enhancers	GM12878-XiMat	blood
7	chr3:133285200-133288200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:133285200-133289600	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:133285600-133287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:133286600-133290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:133286600-133290400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:133286600-133291800	Enhancers	HMEC	breast
13	chr3:133286800-133287200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:133286800-133287200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:133286800-133287200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:133286800-133287200	Enhancers	HSMM	muscle
17	chr3:133286800-133287400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:133286800-133287600	Flanking Active TSS	Hela-S3	cervix
19	chr3:133286800-133287800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:133286800-133287800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:133286800-133288600	Flanking Active TSS	A549	lung
22	chr3:133286800-133288800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:133286800-133288800	Enhancers	HUVEC	blood vessel
24	chr3:133286800-133289600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:133286800-133290200	Enhancers	NHDF-Ad	bronchial
26	chr3:133286800-133290200	Enhancers	NHEK	skin
27	chr3:133286800-133291600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:133287000-133287200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:133287000-133287400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:133287000-133287400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:133287000-133287400	Flanking Active TSS	HepG2	liver
32	chr3:133287000-133287400	Flanking Active TSS	Osteobl	bone
33	chr3:133287000-133287600	Enhancers	Adipose Nuclei	Adipose
34	chr3:133287000-133287600	Flanking Active TSS	NH-A	brain
35	chr3:133287000-133287800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr3:133287000-133287800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr3:133287000-133288000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:133287000-133288600	Weak transcription	Primary B cells from cord blood	blood
39	chr3:133287000-133289400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr3:133287000-133289800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr3:133287000-133290000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:133287000-133290200	Enhancers	Placenta	Placenta
43	chr3:133287000-133290200	Enhancers	NHLF	lung
44	chr3:133287000-133291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:133287000-133291800	Enhancers	HSMMtube	muscle

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