Variant report

Variant	rs10433415
Chromosome Location	chr3:133285530-133285531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133285334..133290041-chr3:133290312..133295358,10	MCF-7	breast:
2	chr3:133284123..133286428-chr3:133295260..133297660,2	K562	blood:
3	chr3:133279685..133281617-chr3:133285489..133287947,2	MCF-7	breast:
4	chr3:133283859..133285638-chr3:133287475..133289524,2	K562	blood:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10935068	0.95[ASN][1000 genomes]
rs13091585	0.96[ASN][1000 genomes]
rs1382701	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444600	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842155	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867506	0.83[ASN][1000 genomes]
rs2002016	0.95[ASN][1000 genomes]
rs35318210	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860498	0.93[JPT][hapmap]
rs4017074	1.00[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4527377	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854723	0.91[ASN][1000 genomes]
rs4854724	0.92[ASN][1000 genomes]
rs4854727	0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4854729	0.83[ASN][1000 genomes]
rs4854732	0.97[ASN][1000 genomes]
rs4854733	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763627	0.94[ASN][1000 genomes]
rs6773777	0.94[ASN][1000 genomes]
rs6773891	0.94[ASN][1000 genomes]
rs6778062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785365	0.94[ASN][1000 genomes]
rs6809513	0.94[ASN][1000 genomes]
rs7614812	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs872134	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:133281400-133287400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:133281800-133286400	Weak transcription	Placenta	Placenta
4	chr3:133282600-133286800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:133282600-133286800	Weak transcription	Osteobl	bone
6	chr3:133282800-133287000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:133283000-133286800	Weak transcription	NH-A	brain
8	chr3:133283200-133286800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:133283200-133286800	Weak transcription	NHDF-Ad	bronchial
10	chr3:133283200-133287000	Weak transcription	NHLF	lung
11	chr3:133283400-133286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:133283400-133287000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:133283600-133286600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:133283600-133286800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:133283600-133287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:133283800-133286800	Weak transcription	HSMM	muscle
17	chr3:133284000-133286600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:133284000-133287000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:133284000-133287000	Weak transcription	HSMMtube	muscle
20	chr3:133284200-133286800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:133284200-133286800	Weak transcription	A549	lung
22	chr3:133284200-133287000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:133284200-133287800	Weak transcription	Spleen	Spleen
24	chr3:133285000-133285600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:133285000-133289200	Weak transcription	Lung	lung
26	chr3:133285000-133291600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:133285200-133287400	Enhancers	GM12878-XiMat	blood
28	chr3:133285200-133288200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr3:133285200-133289600	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:133285400-133285600	Enhancers	Hela-S3	cervix
31	chr3:133285400-133286800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links