Variant report

Variant	rs4854723
Chromosome Location	chr3:133254258-133254259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133253920..133256793-chr3:133259764..133261760,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10433415	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.91[ASN][1000 genomes]
rs10935068	0.94[ASN][1000 genomes]
rs13091585	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1382701	0.91[ASN][1000 genomes]
rs1444600	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs1842155	0.91[ASN][1000 genomes]
rs1867506	0.82[ASN][1000 genomes]
rs2002016	0.94[ASN][1000 genomes]
rs35318210	0.91[ASN][1000 genomes]
rs3860498	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4017074	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4527377	0.91[ASN][1000 genomes]
rs4533654	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs4854724	0.99[ASN][1000 genomes]
rs4854727	0.93[CHD][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs4854729	0.84[ASN][1000 genomes]
rs4854732	0.91[ASN][1000 genomes]
rs4854733	0.82[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs6763627	0.95[ASN][1000 genomes]
rs6773777	0.95[ASN][1000 genomes]
rs6773891	0.95[ASN][1000 genomes]
rs6778062	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs6785365	0.95[ASN][1000 genomes]
rs6809513	0.95[ASN][1000 genomes]
rs7614812	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs872134	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133244400-133254800	Weak transcription	Esophagus	oesophagus
2	chr3:133246400-133255600	Weak transcription	Thymus	Thymus
3	chr3:133246600-133254800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:133250000-133254800	Weak transcription	Spleen	Spleen
5	chr3:133251200-133254400	Weak transcription	Fetal Lung	lung
6	chr3:133251400-133254800	Weak transcription	NHDF-Ad	bronchial
7	chr3:133251600-133254800	Weak transcription	HUVEC	blood vessel
8	chr3:133251800-133254800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:133252000-133254800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:133252200-133254400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:133252200-133254400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:133252200-133254600	Weak transcription	NH-A	brain
13	chr3:133252200-133254800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:133252400-133254600	Weak transcription	Osteobl	bone
15	chr3:133252400-133254800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:133252400-133254800	Weak transcription	HSMMtube	muscle
17	chr3:133252400-133255000	Weak transcription	Fetal Heart	heart
18	chr3:133252800-133254800	Weak transcription	Placenta	Placenta
19	chr3:133253800-133255800	Enhancers	Pancreas	Pancrea
20	chr3:133253800-133257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:133254200-133254800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:133254200-133254800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:133254200-133254800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:133254200-133254800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:133254200-133254800	Enhancers	Hela-S3	cervix
26	chr3:133254200-133254800	Enhancers	NHLF	lung
27	chr3:133254200-133255400	Enhancers	Stomach Mucosa	stomach
28	chr3:133254200-133256000	Enhancers	Adipose Nuclei	Adipose
29	chr3:133254200-133256000	Enhancers	Liver	Liver
30	chr3:133254200-133256000	Enhancers	Ovary	ovary
31	chr3:133254200-133256000	Enhancers	HSMM	muscle
32	chr3:133254200-133256200	Enhancers	Cortex derived primary cultured neurospheres	brain

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