Variant report

Variant	rs56400108
Chromosome Location	chr3:133282041-133282042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133281222..133283937-chr3:133291070..133294749,3	K562	blood:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10935069	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637437	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840521	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840524	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2084003	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425254	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854732	0.85[AFR][1000 genomes]
rs56320905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58407398	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58926483	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59326091	0.82[ASN][1000 genomes]
rs62280428	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62280433	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280438	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280439	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282383	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439423	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66488561	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66549971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789395	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802296	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7429348	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633418	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133280200-133283200	Weak transcription	HepG2	liver
2	chr3:133280800-133283800	Enhancers	HSMM	muscle
3	chr3:133280800-133290600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:133281400-133282600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133281400-133283200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:133281400-133287400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:133281600-133282200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:133281600-133282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133281600-133283200	Enhancers	NHDF-Ad	bronchial
10	chr3:133281600-133283400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:133281600-133285200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:133281600-133285200	Weak transcription	GM12878-XiMat	blood
13	chr3:133281800-133282200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:133281800-133286400	Weak transcription	Placenta	Placenta
15	chr3:133282000-133282400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:133282000-133282600	Enhancers	Osteobl	bone
17	chr3:133282000-133283200	Enhancers	Muscle Satellite Cultured Cells	--

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