Variant report

Variant	rs13088702
Chromosome Location	chr3:121714019-121714020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121573144..121575640-chr3:121713880..121715602,2	MCF-7	breast:
2	chr3:121707943..121710832-chr3:121713197..121716024,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1806655	0.94[ASN][1000 genomes]
rs34188827	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121699400-121714200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:121704800-121721400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:121705200-121729400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:121706000-121721200	Weak transcription	Fetal Kidney	kidney
5	chr3:121707000-121714200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:121708800-121718000	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:121709200-121719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:121709600-121721800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:121711600-121714800	Strong transcription	Fetal Intestine Small	intestine
10	chr3:121711600-121715000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:121711600-121715400	Enhancers	Spleen	Spleen
12	chr3:121712200-121718800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:121712400-121714200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:121712600-121714200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:121712800-121716000	Weak transcription	Fetal Intestine Large	intestine
16	chr3:121712800-121721600	Weak transcription	Colonic Mucosa	Colon
17	chr3:121713000-121732200	Weak transcription	Esophagus	oesophagus
18	chr3:121713200-121714200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:121713200-121717800	Enhancers	Adipose Nuclei	Adipose
20	chr3:121713200-121719000	Enhancers	HUVEC	blood vessel
21	chr3:121713400-121715000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:121713400-121718600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:121713400-121718800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:121713600-121714200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:121713600-121714400	Enhancers	NHLF	lung
26	chr3:121713600-121714800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:121713600-121715000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
28	chr3:121713600-121715200	Genic enhancers	Rectal Mucosa Donor 29	rectum
29	chr3:121713600-121715400	Enhancers	Fetal Muscle Leg	muscle
30	chr3:121713600-121715400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr3:121713600-121716800	Enhancers	Placenta	Placenta
32	chr3:121713800-121714600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr3:121713800-121714800	Enhancers	Primary hematopoietic stem cells	blood
34	chr3:121713800-121715000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:121713800-121715000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr3:121713800-121715200	Enhancers	NH-A	brain
37	chr3:121713800-121718400	Enhancers	Primary B cells from cord blood	blood
38	chr3:121714000-121714200	Enhancers	Right Atrium	heart
39	chr3:121714000-121714400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:121714000-121714400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr3:121714000-121714400	Enhancers	Lung	lung
42	chr3:121714000-121714400	Enhancers	Right Ventricle	heart
43	chr3:121714000-121714600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:121714000-121714600	Enhancers	Gastric	stomach
45	chr3:121714000-121714600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
46	chr3:121714000-121714800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:121714000-121714800	Genic enhancers	Duodenum Mucosa	Duodenum
48	chr3:121714000-121714800	Enhancers	Pancreas	Pancrea
49	chr3:121714000-121714800	Enhancers	Hela-S3	cervix
50	chr3:121714000-121714800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links