Variant report

Variant	rs1806655
Chromosome Location	chr3:121716240-121716241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12486781	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12489988	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13088702	0.94[ASN][1000 genomes]
rs34188827	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121704800-121721400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:121705200-121729400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:121706000-121721200	Weak transcription	Fetal Kidney	kidney
4	chr3:121708800-121718000	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:121709200-121719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:121709600-121721800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:121712200-121718800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:121712800-121721600	Weak transcription	Colonic Mucosa	Colon
9	chr3:121713000-121732200	Weak transcription	Esophagus	oesophagus
10	chr3:121713200-121717800	Enhancers	Adipose Nuclei	Adipose
11	chr3:121713200-121719000	Enhancers	HUVEC	blood vessel
12	chr3:121713400-121718600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:121713400-121718800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:121713600-121716800	Enhancers	Placenta	Placenta
15	chr3:121713800-121718400	Enhancers	Primary B cells from cord blood	blood
16	chr3:121714000-121716800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr3:121714000-121717400	Enhancers	NHEK	skin
18	chr3:121714000-121718000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:121714200-121717400	Weak transcription	Right Atrium	heart
20	chr3:121714200-121717800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:121714400-121716800	Weak transcription	NHLF	lung
22	chr3:121714400-121717200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:121714400-121719800	Weak transcription	Lung	lung
24	chr3:121714600-121717000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:121714600-121719200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:121714800-121716800	Weak transcription	NHDF-Ad	bronchial
27	chr3:121714800-121717200	Weak transcription	Hela-S3	cervix
28	chr3:121714800-121717400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:121714800-121719400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:121714800-121719600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:121714800-121720000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:121715000-121716400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:121715000-121716400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:121715000-121716800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:121715000-121717000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:121715000-121719400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr3:121715000-121719600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:121715200-121716400	Weak transcription	NH-A	brain
39	chr3:121715200-121716600	Weak transcription	Osteobl	bone
40	chr3:121715200-121717600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:121715400-121716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:121715400-121716400	Weak transcription	Spleen	Spleen
43	chr3:121715400-121716600	Weak transcription	HSMM	muscle
44	chr3:121715400-121723400	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:121715400-121723400	Weak transcription	Fetal Thymus	thymus
46	chr3:121716000-121716600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:121716000-121717800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr3:121716000-121718000	Enhancers	Fetal Intestine Large	intestine
49	chr3:121716200-121716400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr3:121716200-121716600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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