Variant report

Variant	rs13088906
Chromosome Location	chr3:112418231-112418232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:112418148-112418773	SK-N-SH	brain:	n/a	n/a
2	EP300	chr3:112418120-112418909	A549	lung:	n/a	n/a
3	NR3C1	chr3:112418163-112418830	A549	lung:	n/a	n/a
4	SP1	chr3:112418139-112418934	A549	lung:	n/a	n/a
5	FOSL2	chr3:112418057-112418862	SK-N-SH	brain:	n/a	n/a
6	JUND	chr3:112418062-112418804	SK-N-SH	brain:	n/a	n/a
7	REST	chr3:112418227-112418468	SK-N-SH	brain:	n/a	n/a
8	TCF12	chr3:112418051-112418938	SK-N-SH	brain:	n/a	n/a
9	JUND	chr3:112418211-112418818	SK-N-SH	brain:	n/a	n/a
10	FOSL2	chr3:112418198-112418691	SK-N-SH	brain:	n/a	n/a
11	TCF12	chr3:112418139-112418713	A549	lung:	n/a	n/a
12	GATA3	chr3:112418174-112418993	A549	lung:	n/a	n/a
13	ZBTB33	chr3:112418182-112418847	SK-N-SH	brain:	n/a	n/a
14	EP300	chr3:112418172-112418944	SK-N-SH	brain:	n/a	n/a
15	PBX3	chr3:112418189-112418775	SK-N-SH	brain:	n/a	n/a
16	PBX3	chr3:112418051-112418831	SK-N-SH	brain:	n/a	n/a
17	NFIC	chr3:112418162-112418844	SK-N-SH	brain:	n/a	n/a
18	TEAD4	chr3:112418176-112418772	SK-N-SH	brain:	n/a	n/a
19	EP300	chr3:112418139-112418823	SK-N-SH	brain:	n/a	n/a
20	NR3C1	chr3:112418231-112418809	A549	lung:	n/a	n/a
21	JUND	chr3:112418144-112418927	SK-N-SH	brain:	n/a	n/a
22	GATA3	chr3:112418050-112418943	SK-N-SH	brain:	n/a	n/a
23	MAX	chr3:112418194-112418660	SK-N-SH	brain:	n/a	n/a
24	GATA3	chr3:112418047-112418901	SK-N-SH	brain:	n/a	n/a
25	TCF12	chr3:112418051-112418819	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000242308	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10934181	0.87[AFR][1000 genomes]
rs1387014	0.84[AFR][1000 genomes]
rs4682419	0.87[AFR][1000 genomes]
rs6794167	0.90[AFR][1000 genomes]
rs9821598	0.82[AFR][1000 genomes]
rs9837830	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112409400-112418400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:112416200-112418600	Enhancers	K562	blood
3	chr3:112416800-112418600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:112417000-112418800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:112417000-112419000	Enhancers	HSMM	muscle
6	chr3:112417600-112419000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:112417800-112418600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:112417800-112419000	Enhancers	NHDF-Ad	bronchial
9	chr3:112418000-112418400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:112418000-112418600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:112418000-112418600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:112418000-112418600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:112418000-112418800	Enhancers	Osteobl	bone
14	chr3:112418000-112419600	Enhancers	NHEK	skin
15	chr3:112418200-112418400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:112418200-112418600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:112418200-112418600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:112418200-112418600	Enhancers	A549	lung
19	chr3:112418200-112418600	Enhancers	HSMMtube	muscle
20	chr3:112418200-112418600	Enhancers	NH-A	brain
21	chr3:112418200-112419000	Enhancers	HUVEC	blood vessel
22	chr3:112418200-112419000	Enhancers	NHLF	lung
23	chr3:112418200-112419200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:112418200-112419200	Enhancers	HMEC	breast

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